| Protein: | FAR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 830 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
|
Region A: Residues: [1-174] |
1 11 21 31 41 51
| | | | | |
1 MKTPTRVSFE KKIHTPPSGD RDAERSPPKK FLRGLSGKVF RKTPEFKKQQ MPTFGYIEES 60
61 QFTPNLGLMM SKRGNIPKPL NLSKPISPPP SLKKTAGSVA SGFSKTGQLS ALQSPVNITS 120
121 SNKYNIKATN LTTSLLRESI SDSTTMCDTL SDINLTVMDE DYRIDGDSYY EEDS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.432 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
|
Region A: Residues: [175-521] |
1 11 21 31 41 51
| | | | | |
1 PTFMISLERN IKKCNSQFSP KRYIGEKCLI CEESISSTFT GEKVVESTCS HTSHYNCYLM 60
61 LFETLYFQGK FPECKICGEV SKPKDKDIVP EMVSKLLTGA GAHDDGPSSN MQQQWIDLKT 120
121 ARSFTGEFPQ FTPQEQLIRT ADISCDGFRT PRLSNSNQFE AVSYLDSPFL NSPFVNKMAT 180
181 TDPFDLSDDE KLDCDDEIDE SAAEVWFSKT GGEHVMVSVK FQEMRTSDDL GVLQDVNHVD 240
241 HEELEEREKE WKKKIDQYIE TNVDKDSEFG SLILFDKLMY SDDGEQWVDN NLVILFSKFL 300
301 VLFDFEEMKI LGKIPRDQFY QVIKFNEDVL LCSLKSTNIP EIYLRFN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.70912934275371 | bayes_pls_golite062009 |
| transcription regulator activity | 2.28868969987463 | bayes_pls_golite062009 |
| nucleic acid binding | 1.91032952208441 | bayes_pls_golite062009 |
| DNA binding | 1.68057595006321 | bayes_pls_golite062009 |
| protein binding | 1.48593945455888 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.29842157714791 | bayes_pls_golite062009 |
| ligase activity | 1.14926486052218 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.11631628759929 | bayes_pls_golite062009 |
| transcription factor activity | 0.94885431027576 | bayes_pls_golite062009 |
| transcription factor binding | 0.910854221571241 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.405909265264862 | bayes_pls_golite062009 |
| transcription repressor activity | 0.185296082082721 | bayes_pls_golite062009 |
| catalytic activity | 0.168711389690753 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.0236792532316743 | bayes_pls_golite062009 |
|
Region A: Residues: [522-830] |
1 11 21 31 41 51
| | | | | |
1 ENCEKWLLPK WKYCLENSSL ETLPLSEIVS TVKELSHVNI IGALGAPPDV ISAQSHDSRL 60
61 PWKRLHSDTP LKLIVCLNLS HADGELYRKR VLKSVHQILD GLNTDDLLGI VVVGRDGSGV 120
121 VGPFGTFIGM INKNWDGWTT FLDNLEVVNP NVFRDEKQQY KVTLQTCERL ASTSAYVDTD 180
181 DHIATGYAKQ ILVLNGSDVV DIEHDQKLKK AFDQLSYHWR YEISQRRMTP LNASIKQFLE 240
241 ELHTKRYLDV TLRLPQATFE QVYLGDMAAG EQKTRLIMDE HPHSSLIEIE YFDLVKQQRI 300
301 HQTLEVPNL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [458-566] |
1 11 21 31 41 51
| | | | | |
1 GEQWVDNNLV ILFSKFLVLF DFEEMKILGK IPRDQFYQVI KFNEDVLLCS LKSTNIPEIY 60
61 LRFNENCEKW LLPKWKYCLE NSSLETLPLS EIVSTVKELS HVNIIGALG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [567-830] |
1 11 21 31 41 51
| | | | | |
1 APPDVISAQS HDSRLPWKRL HSDTPLKLIV CLNLSHADGE LYRKRVLKSV HQILDGLNTD 60
61 DLLGIVVVGR DGSGVVGPFG TFIGMINKNW DGWTTFLDNL EVVNPNVFRD EKQQYKVTLQ 120
121 TCERLASTSA YVDTDDHIAT GYAKQILVLN GSDVVDIEHD QKLKKAFDQL SYHWRYEISQ 180
181 RRMTPLNASI KQFLEELHTK RYLDVTLRLP QATFEQVYLG DMAAGEQKTR LIMDEHPHSS 240
241 LIEIEYFDLV KQQRIHQTLE VPNL
|
| Detection Method: | |
| Confidence: | 2.0 |
| Match: | 1t6bY |
| Description: | Crystal structure of B. anthracis Protective Antigen complexed with human Anthrax toxin receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.68315152218267 | bayes_pls_golite062009 |
| nucleic acid binding | 1.69563050637199 | bayes_pls_golite062009 |
| DNA binding | 1.5974492205508 | bayes_pls_golite062009 |
| protein binding | 1.42792331963866 | bayes_pls_golite062009 |
| protein complex binding | 1.2199981922324 | bayes_pls_golite062009 |
| receptor binding | 1.00252885030613 | bayes_pls_golite062009 |
| receptor activity | 0.898641472317111 | bayes_pls_golite062009 |
| signal transducer activity | 0.670518084602683 | bayes_pls_golite062009 |
| molecular transducer activity | 0.670518084602683 | bayes_pls_golite062009 |
| structural molecule activity | 0.344350079952659 | bayes_pls_golite062009 |
| peptide binding | 0.0829901132484674 | bayes_pls_golite062009 |
| catalytic activity | 0.0380261580236634 | bayes_pls_golite062009 |
