| Protein: | MRS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 363 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..363] | [1..363] |
|
|
0.0 | [1..363] | [1..363] |
|
|
0.004 | [73..218] | [42..190] |
|
Region A: Residues: [1-69] |
1 11 21 31 41 51
| | | | | |
1 MSPKNITRSV IPAIDLYCRK ANFKTLKSLS MILGSKKEWY DTKKAPLRTF LVSRCGIFEQ 60
61 LRGRLVEDG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.752 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.751 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.710 | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.742 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.677 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.643 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.640 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.585 | a.2.7 | tRNA-binding arm |
| View | Download | 0.535 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.521 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.501 | a.59.1 | PAH2 domain |
| View | Download | 0.467 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.443 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.436 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.432 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.431 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.406 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.400 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.399 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.391 | g.2.2 | Neurotoxin B-IV |
| View | Download | 0.387 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.372 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.359 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.357 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.348 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.334 | a.24.4 | Hemerythrin |
| View | Download | 0.328 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.326 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.322 | c.47.1 | Thioredoxin-like |
| View | Download | 0.307 | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.305 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.301 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.294 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.290 | a.1.1 | Globin-like |
| View | Download | 0.284 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.283 | a.64.1 | Saposin |
| View | Download | 0.278 | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.276 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.274 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.268 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.268 | a.64.1 | Saposin |
| View | Download | 0.265 | a.60.8 | HRDC-like |
| View | Download | 0.264 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.263 | a.112.1 | Description not found. |
| View | Download | 0.257 | a.4.1 | Homeodomain-like |
| View | Download | 0.255 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.248 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.246 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.244 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.239 | a.150.1 | Anti-sigma factor AsiA |
| View | Download | 0.239 | a.74.1 | Cyclin-like |
| View | Download | 0.237 | a.49.1 | C-terminal domain of B transposition protein |
| View | Download | 0.233 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.232 | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.231 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.226 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.225 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.223 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.218 | a.4.1 | Homeodomain-like |
| View | Download | 0.218 | a.2.7 | tRNA-binding arm |
| View | Download | 0.216 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.216 | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.216 | c.47.1 | Thioredoxin-like |
| View | Download | 0.215 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.214 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.214 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.208 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.207 | a.28.1 | ACP-like |
| View | Download | 0.206 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.205 | a.46.1 | Methionine synthase domain |
| View | Download | 0.205 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.205 | a.2.3 | Chaperone J-domain |
| View | Download | 0.204 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.201 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| Term | Confidence | Notes |
| nuclease activity | 2.26556994009539 | bayes_pls_golite062009 |
| 2.00836055708423 | bayes_pls_golite062009 | |
| ribonuclease activity | 1.78000986678433 | bayes_pls_golite062009 |
| exoribonuclease activity | 1.32264233824256 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 1.27522285482764 | bayes_pls_golite062009 |
| catalytic activity | 1.25233849524628 | bayes_pls_golite062009 |
| transcription regulator activity | 1.20586272399219 | bayes_pls_golite062009 |
| nucleic acid binding | 1.15524113948715 | bayes_pls_golite062009 |
| hydrolase activity, acting on ester bonds | 1.05288004668073 | bayes_pls_golite062009 |
| 3'-5'-exoribonuclease activity | 0.99953538134208 | bayes_pls_golite062009 |
| exonuclease activity | 0.967966366451269 | bayes_pls_golite062009 |
| DNA binding | 0.943022297191079 | bayes_pls_golite062009 |
| binding | 0.925646122805083 | bayes_pls_golite062009 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 0.830848153280868 | bayes_pls_golite062009 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.681014317532767 | bayes_pls_golite062009 |
| endonuclease activity | 0.635517699603511 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.4571735090405 | bayes_pls_golite062009 |
| transcription factor activity | 0.350780284864953 | bayes_pls_golite062009 |
| RNA binding | 0.239100354404122 | bayes_pls_golite062009 |
| protein binding | 0.035326007863533 | bayes_pls_golite062009 |
| endoribonuclease activity | 0.016619833072142 | bayes_pls_golite062009 |
|
Region A: Residues: [70-218] |
1 11 21 31 41 51
| | | | | |
1 KVNLFSVFLT NDSFSFCKMT VDDKFNTSLV DWQKIPFDST FATDRRQNIS LLPVDTLFAT 60
61 EKIISILGVS PNMTNLVSIE RERSDLVDFN CKLQSNILEH LLYAKCQGVY VTSTNEKARL 120
121 LAAVCNPEFI DTFWCELTPI RVSLKENPS
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1kcfA_ |
| Description: | Mitochondrial resolvase ydc2 N-terminal domain; Mitochondrial resolvase ydc2 catalytic domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [219-363] |
1 11 21 31 41 51
| | | | | |
1 ISVPREYQMY DPVVRATIKE VVTKRLLRSA FDNDIDPLMC LHLDKGWKLK FPILSSTTGL 60
61 NFSLKDCLSL DTGKDASDMT EVFLATMESS KVLRTYSNLV DIVMKDNGRL DSGVLKQFND 120
121 YVKQEKLNLQ HFQAGSSKFL KGAKI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.491 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.262 | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.422 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.261 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.359 | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.256 | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.251 | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.237 | d.118.1 | N-acetylmuramoyl-L-alanine amidase-like |
| View | Download | 0.225 | a.22.1 | Histone-fold |
| View | Download | 0.221 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.217 | a.118.1 | ARM repeat |
| View | Download | 0.208 | a.1.1 | Globin-like |
| View | Download | 0.206 | a.118.8 | TPR-like |
