| Protein: | PET54 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 293 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PET54.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..293] | [1..294] |
|
|
0.0 | [1..293] | [1..293] |
|
Region A: Residues: [1-293] |
1 11 21 31 41 51
| | | | | |
1 MKASSKAIKL VLDHLKSTGR VLGSVESGNS ATISEKTASV NKQQQLQEKK PSVLQYRSYN 60
61 PYLVKEDFLS ILPENLYKKR GQFTNELDFQ LMKVRDPKYF QFKDQYYLFF NDYNSLTEYI 120
121 KLTKHSRINK IRVKMTPLAQ PLPTLLTKLQ RYSKNLYNAF RSSEQYFEGL NEKVDVSGEF 180
181 TTNQLRSILD SVEEIENKSV LVWNIPTKLR SHDILNYFWF YNIRSSFKIY WDDEMKRNLR 240
241 FISFENSHDA YRFKRNYHGL LAKELLTLSE KGDAADYSLE MDDSKILIEH LSE
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [136-293] |
1 11 21 31 41 51
| | | | | |
1 TPLAQPLPTL LTKLQRYSKN LYNAFRSSEQ YFEGLNEKVD VSGEFTTNQL RSILDSVEEI 60
61 ENKSVLVWNI PTKLRSHDIL NYFWFYNIRS SFKIYWDDEM KRNLRFISFE NSHDAYRFKR 120
121 NYHGLLAKEL LTLSEKGDAA DYSLEMDDSK ILIEHLSE
|
| Detection Method: | |
| Confidence: | 1.19 |
| Match: | 2cqdA |
| Description: | Solution Structure of the RNA recognition motif in RNA-binding region containing protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.6649737847299 | bayes_pls_golite062009 |
| RNA binding | 3.54132281875185 | bayes_pls_golite062009 |
| mRNA binding | 3.12096544084441 | bayes_pls_golite062009 |
| binding | 3.05100551329453 | bayes_pls_golite062009 |
| 2.65416081536729 | bayes_pls_golite062009 | |
| transcription regulator activity | 1.20182415212933 | bayes_pls_golite062009 |
| DNA binding | 1.06738888024145 | bayes_pls_golite062009 |
| protein binding | 1.05805521997665 | bayes_pls_golite062009 |
| structural molecule activity | 0.767649718525223 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.761573507268535 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.470675891495223 | bayes_pls_golite062009 |
| transcription factor activity | 0.273768131383019 | bayes_pls_golite062009 |
| translation regulator activity | 0.246220338604608 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.23733335659183 | bayes_pls_golite062009 |
| transcription factor binding | 0.0848709019823142 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.0127733116412899 | bayes_pls_golite062009 |
| snRNA binding | 0.00892689194659768 | bayes_pls_golite062009 |
