| Protein: | UBR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1950 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1950] | [1..1950] |
|
|
0.0 | [11..1948] | [11..1916] |
|
|
0.0 | [30..1387] | [10..1393] |
|
|
0.0 | [120..1334] | [13..1265] |
|
|
0.0 | [488..1361] | [322..1243] |
|
|
0.0 | [479..1423] | [574..1554] |
|
|
0.0 | [639..1820] | [5..1269] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MSVADDDLGS LQGHIRRTLR SIHNLPYFRY TRGPTERADM SRALKEFIYR YLYFVISNSG 60
61 ENLPTLFNAH PKQKL
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.475 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.527 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.509 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.471 | d.58.49 | YajQ-like |
| View | Download | 0.862 | a.112.1 | Description not found. |
| View | Download | 0.862 | a.112.1 | Description not found. |
| View | Download | 0.527 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.509 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.505 | a.112.1 | Description not found. |
| View | Download | 0.494 | a.112.1 | Description not found. |
| View | Download | 0.454 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.442 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.427 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.420 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.396 | a.64.1 | Saposin |
| View | Download | 0.391 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.385 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.370 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.357 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.338 | a.39.4 | Hypothetical protein MTH865 |
| View | Download | 0.337 | a.2.3 | Chaperone J-domain |
| View | Download | 0.312 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.303 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.286 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.277 | a.22.1 | Histone-fold |
| View | Download | 0.275 | a.7.7 | BAG domain |
| View | Download | 0.275 | a.2.7 | tRNA-binding arm |
| View | Download | 0.271 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.266 | a.2.4 | Theta subunit of DNA polymerase III |
| View | Download | 0.262 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.261 | a.3.1 | Cytochrome c |
| View | Download | 0.259 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.256 | a.64.1 | Saposin |
| View | Download | 0.255 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.250 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.247 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.246 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.243 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.240 | a.74.1 | Cyclin-like |
| View | Download | 0.234 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.232 | a.4.1 | Homeodomain-like |
| View | Download | 0.221 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.204 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.200 | a.26.1 | 4-helical cytokines |
| View | Download | 0.200 | a.57.1 | Protein HNS-dependent expression A; HdeA |
|
Region A: Residues: [76-205] |
1 11 21 31 41 51
| | | | | |
1 SNPELTVFPD SLEDAVDIDK ITSQQTIPFY KIDESRIGDV HKHTGRNCGR KFKIGEPLYR 60
61 CHECGCDDTC VLCIHCFNPK DHVNHHVCTD ICTEFTSGIC DCGDEEAWNS PLHCKAEEQE 120
121 NDISEDPATN
|
| Detection Method: | |
| Confidence: | 35.853872 |
| Match: | PF02207 |
| Description: | Putative zinc finger in N-recognin |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.261 | N/A | N/A | b.60.1 | Lipocalins |
| View | Download | 0.255 | N/A | N/A | b.60.1 | Lipocalins |
|
Region A: Residues: [206-684] |
1 11 21 31 41 51
| | | | | |
1 ADIKEEDVWN DSVNIALVEL VLAEVFDYFI DVFNQNIEPL PTIQKDITIK LREMTQQGKM 60
61 YERAQFLNDL KYENDYMFDG TTTAKTSPSN SPEASPSLAK IDPENYTVII YNDEYHNYSQ 120
121 ATTALRQGVP DNVHIDLLTS RIDGEGRAML KCSQDLSSVL GGFFAVQTNG LSATLTSWSE 180
181 YLHQETCKYI ILWITHCLNI PNSSFQTTFR NMMGKTLCSE YLNATECRDM TPVVEKYFSN 240
241 KFDKNDPYRY IDLSILADGN QIPLGHHKIL PESSTHSLSP LINDVETPTS RTYSNTRLQH 300
301 ILYFDNRYWK RLRKDIQNVI IPTLASSNLY KPIFCQQVVE IFNHITRSVA YMDREPQLTA 360
361 IRECVVQLFT CPTNAKNIFE NQSFLDIVWS IIDIFKEFCK VEGGVLIWQR VQKSNLTKSY 420
421 SISFKQGLYT VETLLSKVHD PNIPLRPKEI ISLLTLCKLF NGAWKIKRKE GEHVLHEDQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [685-1257] |
1 11 21 31 41 51
| | | | | |
1 NFISYLEYTT SIYSIIQTAE KVSEKSKDSI DSKLFLNAIR IISSFLGNRS LTYKLIYDSH 60
61 EVIKFSVSHE RVAFMNPLQT MLSFLIEKVS LKDAYEALED CSDFLKISDF SLRSVVLCSQ 120
121 IDVGFWVRNG MSVLHQASYY KNNPELGSYS RDIHLNQLAI LWERDDIPRI IYNILDRWEL 180
181 LDWFTGEVDY QHTVYEDKIS FIIQQFIAFI YQILTERQYF KTFSSLKDRR MDQIKNSIIY 240
241 NLYMKPLSYS KLLRSVPDYL TEDTTEFDEA LEEVSVFVEP KGLADNGVFK LKASLYAKVD 300
301 PLKLLNLENE FESSATIIKS HLAKDKDEIA KVVLIPQVSI KQLDKDALNL GAFTRNTVFA 360
361 KVVYKLLQVC LDMEDSTFLN ELLHLVHGIF RDDELINGKD SIPEAYLSKP ICNLLLSIAN 420
421 AKSDVFSESI VRKADYLLEK MIMKKPNELF ESLIASFGNQ YVNDYKDKKL RQGVNLQETE 480
481 KERKRRLAKK HQARLLAKFN NQQTKFMKEH ESEFDEQDND VDMVGEKVYE SEDFTCALCQ 540
541 DSSSTDFFVI PAYHDHSPIF RPGNIFNPNE FMP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1258-1556] |
1 11 21 31 41 51
| | | | | |
1 MWDGFYNDDE KQAYIDDDVL EALKENGSCG SRKVFVSCNH HIHHNCFKRY VQKKRFSSNA 60
61 FICPLCQTFS NCTLPLCQTS KANTGLSLDM FLESELSLDT LSRLFKPFTE ENYRTINSIF 120
121 SLMISQCQGF DKAVRKRANF SHKDVSLILS VHWANTISML EIASRLEKPY SISFFRSREQ 180
181 KYKTLKNILV CIMLFTFVIG KPSMEFEPYP QQPDTVWNQN QLFQYIVRSA LFSPVSLRQT 240
241 VTEALTTFSR QFLRDFLQGL SDAEQVTKLY AKASKIGDVL KVSEQMLFAL RTISDVRME
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1557-1826] |
1 11 21 31 41 51
| | | | | |
1 GLDSESIIYD LAYTFLLKSL LPTIRRCLVF IKVLHELVKD SENETLVING HEVEEELEFE 60
61 DTAEFVNKAL KMITEKESLV DLLTTQESIV SHPYLENIPY EYCGIIKLID LSKYLNTYVT 120
121 QSKEIKLREE RSQHMKNADN RLDFKICLTC GVKVHLRADR HEMTKHLNKN CFKPFGAFLM 180
181 PNSSEVCLHL TQPPSNIFIS APYLNSHGEV GRNAMRRGDL TTLNLKRYEH LNRLWINNEI 240
241 PGYISRVMGD EFRVTILSNG FLFAFNREPR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1827-1950] |
1 11 21 31 41 51
| | | | | |
1 PRRIPPTDED DEDMEEGEDG FFTEGNDEMD VDDETGQAAN LFGVGAEGIA GGGVRDFFQF 60
61 FENFRNTLQP QGNGDDDAPQ NPPPILQFLG PQFDGATIIR NTNPRNLDED DSDDNDDSDE 120
121 REIW
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.459 | a.74.1 | Cyclin-like |
| View | Download | 0.359 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.263 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.244 | a.1.1 | Globin-like |
| View | Download | 0.220 | c.95.1 | Thiolase-like |
|
Region A: Residues: [871-1009] |
1 11 21 31 41 51
| | | | | |
1 EVDYQHTVYE DKISFIIQQF IAFIYQILTE RQYFKTFSSL KDRRMDQIKN SIIYNLYMKP 60
61 LSYSKLLRSV PDYLTEDTTE FDEALEEVSV FVEPKGLADN GVFKLKASLY AKVDPLKLLN 120
121 LENEFESSAT IIKSHLAKD
|
| Detection Method: | |
| Confidence: | 2.35 |
| Match: | 2doaA |
| Description: | No description for 2doaA was found. |
| Term | Confidence | Notes |
| hydrolase activity | 2.37143167527915 | bayes_pls_golite062009 |
| nucleic acid binding | 2.23450316335876 | bayes_pls_golite062009 |
| binding | 2.14387047687719 | bayes_pls_golite062009 |
| DNA binding | 2.04297552772596 | bayes_pls_golite062009 |
| transcription regulator activity | 2.02735936435983 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.96945784119904 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.76884421390271 | bayes_pls_golite062009 |
| transcription factor activity | 1.26194702122873 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 1.24657793410496 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.95341825085177 | bayes_pls_golite062009 |
| protein binding | 0.863483803868456 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.111186019165274 | bayes_pls_golite062009 |
|
Region A: Residues: [1010-1156] |
1 11 21 31 41 51
| | | | | |
1 KDEIAKVVLI PQVSIKQLDK DALNLGAFTR NTVFAKVVYK LLQVCLDMED STFLNELLHL 60
61 VHGIFRDDEL INGKDSIPEA YLSKPICNLL LSIANAKSDV FSESIVRKAD YLLEKMIMKK 120
121 PNELFESLIA SFGNQYVNDY KDKKLRQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1157-1327] |
1 11 21 31 41 51
| | | | | |
1 GVNLQETEKE RKRRLAKKHQ ARLLAKFNNQ QTKFMKEHES EFDEQDNDVD MVGEKVYESE 60
61 DFTCALCQDS SSTDFFVIPA YHDHSPIFRP GNIFNPNEFM PMWDGFYNDD EKQAYIDDDV 120
121 LEALKENGSC GSRKVFVSCN HHIHHNCFKR YVQKKRFSSN AFICPLCQTF S
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1328-1554] |
1 11 21 31 41 51
| | | | | |
1 NCTLPLCQTS KANTGLSLDM FLESELSLDT LSRLFKPFTE ENYRTINSIF SLMISQCQGF 60
61 DKAVRKRANF SHKDVSLILS VHWANTISML EIASRLEKPY SISFFRSREQ KYKTLKNILV 120
121 CIMLFTFVIG KPSMEFEPYP QQPDTVWNQN QLFQYIVRSA LFSPVSLRQT VTEALTTFSR 180
181 QFLRDFLQGL SDAEQVTKLY AKASKIGDVL KVSEQMLFAL RTISDVR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1555-1654] |
1 11 21 31 41 51
| | | | | |
1 MEGLDSESII YDLAYTFLLK SLLPTIRRCL VFIKVLHELV KDSENETLVI NGHEVEEELE 60
61 FEDTAEFVNK ALKMITEKES LVDLLTTQES IVSHPYLENI
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1655-1805] |
1 11 21 31 41 51
| | | | | |
1 PYEYCGIIKL IDLSKYLNTY VTQSKEIKLR EERSQHMKNA DNRLDFKICL TCGVKVHLRA 60
61 DRHEMTKHLN KNCFKPFGAF LMPNSSEVCL HLTQPPSNIF ISAPYLNSHG EVGRNAMRRG 120
121 DLTTLNLKRY EHLNRLWINN EIPGYISRVM G
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1806-1950] |
1 11 21 31 41 51
| | | | | |
1 DEFRVTILSN GFLFAFNREP RPRRIPPTDE DDEDMEEGED GFFTEGNDEM DVDDETGQAA 60
61 NLFGVGAEGI AGGGVRDFFQ FFENFRNTLQ PQGNGDDDAP QNPPPILQFL GPQFDGATII 120
121 RNTNPRNLDE DDSDDNDDSD EREIW
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.459 | a.74.1 | Cyclin-like |
| View | Download | 0.359 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.324 | a.74.1 | Cyclin-like |
| View | Download | 0.263 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.256 | a.74.1 | Cyclin-like |
