| Protein: | SIP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 415 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIP2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..415] | [1..415] |
|
|
0.0 | [7..413] | [15..486] |
|
|
1.0E-85 | [114..412] | [23..282] |
|
|
4.0E-80 | [114..412] | [23..270] |
|
|
2.0E-79 | [114..412] | [23..270] |
|
Region A: Residues: [1-97] |
1 11 21 31 41 51
| | | | | |
1 MGTTTSHPAQ KKQTTKKCRA PIMSDVREKP SNAQGCEPQE MDAVSKKVTE LSLNKCSDSQ 60
61 DAGQPSREGS ITKKKSTLLL RDEDEPTMPK LSVMETA
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.567 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.398 | d.1.1 | Microbial ribonucleases |
| View | Download | 0.433 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.409 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.444 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.567 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.444 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.433 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.409 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.398 | d.1.1 | Microbial ribonucleases |
| View | Download | 0.386 | d.88.1 | SRF-like |
| View | Download | 0.357 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.345 | a.64.1 | Saposin |
| View | Download | 0.334 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.329 | d.82.2 | Frataxin-like |
| View | Download | 0.328 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.326 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.317 | a.130.1 | Chorismate mutase II |
| View | Download | 0.284 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.281 | d.102.1 | Regulatory factor Nef |
| View | Download | 0.277 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.255 | b.9.1 | Neurophysin II |
| View | Download | 0.251 | a.39.1 | EF-hand |
| View | Download | 0.241 | a.4.1 | Homeodomain-like |
| View | Download | 0.233 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.231 | a.2.3 | Chaperone J-domain |
| View | Download | 0.226 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.226 | d.58.17 | Metal-binding domain |
| View | Download | 0.217 | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.212 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.210 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.204 | a.74.1 | Cyclin-like |
| View | Download | 0.203 | a.112.1 | Description not found. |
| View | Download | 0.203 | a.29.2 | Bromodomain |
| View | Download | 0.201 | a.4.1 | Homeodomain-like |
|
Region A: Residues: [98-415] |
1 11 21 31 41 51
| | | | | |
1 VDTDSGSSST SDDEEGDIIA QTTEPKQDAS PDDDRSGHSS PREEGQQQIR AKEASGGPSE 60
61 IKSSLMVPVE IRWQQGGSKV YVTGSFTKWR KMIGLIPDSD NNGSFHVKLR LLPGTHRFRF 120
121 IVDNELRVSD FLPTATDQMG NFVNYIEVRQ PEKNPTNEKI RSKEADSMRP PTSDRSSIAL 180
181 QIGKDPDDFG DGYTRFHEDL SPRPPLEYTT DIPAVFTDPS VMERYYYTLD RQQSNTDTSW 240
241 LTPPQLPPQL ENVILNKYYA TQDQFNENNS GALPIPNHVV LNHLVTSSIK HNTLCVASIV 300
301 RYKQKYVTQI LYTPIESS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| AMP-activated protein kinase activity | 4.78975226545815 | bayes_pls_golite062009 |
| binding | 2.65544526722793 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 2.18099602369564 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.66390525860632 | bayes_pls_golite062009 |
| kinase activity | 1.64560031716993 | bayes_pls_golite062009 |
| cation channel activity | 1.61654093209843 | bayes_pls_golite062009 |
| ligand-gated channel activity | 1.56948414427108 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 1.56948414427108 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.53194692728729 | bayes_pls_golite062009 |
| protein binding | 1.50286160643298 | bayes_pls_golite062009 |
| gated channel activity | 1.48812502999143 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.46948685366075 | bayes_pls_golite062009 |
| protein kinase activity | 1.44964326848891 | bayes_pls_golite062009 |
| transferase activity | 1.26709925711174 | bayes_pls_golite062009 |
| signal transducer activity | 1.12993648323166 | bayes_pls_golite062009 |
| molecular transducer activity | 1.12993648323166 | bayes_pls_golite062009 |
| ion channel activity | 1.10689326077049 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.726369450752205 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.60798225319459 | bayes_pls_golite062009 |
| actin binding | 0.54002000529721 | bayes_pls_golite062009 |
| enzyme binding | 0.37496592438035 | bayes_pls_golite062009 |
| inward rectifier potassium channel activity | 0.252254893587557 | bayes_pls_golite062009 |
| potassium channel activity | 0.0778382534131277 | bayes_pls_golite062009 |
