YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ITC1
Organism: Saccharomyces cerevisiae
Length: 1264 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ITC1.

Description E-value Query
Range
Subject
Range
YPL216W - Putative protein of unknown function; YPL216W is not an essential gene
YP216_YEAST - Putative ISWI chromatin-remodeling complex subunit YPL216W OS=Saccharomyces cerevisiae (strain ATCC ...
0.0 [1..1212] [1..1062]
BAZ1A - bromodomain adjacent to zinc finger domain, 1A
0.0 [1..477] [1..481]
CE27187 - status:Partially_confirmed UniProt:Q9N5L9 protein_id:AAF39888.2
0.0 [1..518] [16..575]
BAZ1A_MOUSE, BA1... - (O88379) Bromodomain adjacent to zinc finger domain 1A (Cbp146) (Fragment), (O88379) Bromodomain adj...
2.0E-92 [21..364] [3..324]
gi|7635502 - gi|7635502|emb|CAB88669.1| chromatin accessibility complex (CHRAC) [Drosophila melanogaster]
2.0E-87 [1..483] [1..413]

Back

Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLYKRKPIL LPDPKPLPLD LNVQVWHIEE TGEWFSSYEE FLERFDFYTR HHFTCEITGT  60
   61 SCLTFFQALD SEETQFKYVE DRFPLKLREP VARFLHFNGI RRLDALVEKV YARFKNDFF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [120-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGEVVYLRKQ KDSSTTSSNS QQSTPQPDDM VEINSVGNPG LPQYQYQRRY VIKEKVQFNA  60
   61 TINPESREIV MPAHTKYMLI EEAASSNKSF IVDQGQIYRD RSTFTKHLIK CFFKITLQRA 120
  121 SSKMGAPWCV KPEYLAMYGL TMEWPKDMLK YKEDEPVVAR RSNSANVSSP ESEKNKRQSK 180
  181 SSGKSNTSND ASNKKETKKK RKPTEVNDSE NNSSEEDKKK GQNVTSETHS KKRKKEANEE 240
  241 PNTENVESVP TPANAEPQAV TITSIMDDLA LPYQHPPNIF PNLTYYNEKL ECIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [414-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGSTKLSRPF DSFGKLLQAY QFLNTFGSKI CLSHFSLDQF ITSLKCTDPY ELKGEVVLVN  60
   61 IRTQTSKEQE IENNGLPMKN KAETTTEEDS ENP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.853872
Match: PF02791
Description: DDT domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [507-1264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDWQRNSFIR DMIMKRNSDK VEYKIVHDDP ASDDILDNIN HNGSALLIEV FTALLRLFIN  60
   61 EEGDWSCIVV ENWIIDDKGV LMERKDERGE GEAKQKRNAH GYFLQDKEKI DNLKDTLKEN 120
  121 ATEVQKESDA KNETNSESDS KSDSDSEERD PKLEKCLNYR NVNWIERLTK RQFNNSYWLI 180
  181 ILLGVLEDCR HLPMYTEFID SFIEKIIPKD ISATQLPKQL WRNFCRKLSF SDKVNALWIL 240
  241 VDLVSHFSPD IKAAVDDSME LCGQIRSERF KVARELKTEA AVLSNLQGDL QAIQEKLNKT 300
  301 DENTPSADGA DKKDDSESNS EPIDLIIIEK KQKLIEEQDK KVQALQSDKN FLDNCLFEND 360
  361 LQRLKPLGLD RYGNRYFWLD HNGVPFPQYP AGMNETPKSN NSLSYHSGRL LIQGPKASSA 420
  421 KFFLNVSDEQ LSNWQKIRNS EGISEATREV FGISKTSSGS YNYVENGIEV ELLDSNDRVN 480
  481 PLIELTPIQK KIMDETPSRL LLSPDQWYCI DKLEDLSRIM DWLDNWGRKE HDLLRQIRPI 540
  541 MERIKSSLSL RDHALSLTAF TKNEEKLLKE LENNEFTENE LNVDSMDVDD KNSGVKSEVD 600
  601 VQVDAEEKRE AVIDEKLEVI ADELMKLDDS SKTRNVLNRI QELEDQRDEL LEQKKSIINS 660
  661 QRPGARILAR SERKRTKISR GNKVNKQIEI LTDLVNYRHF KAMEDVIAWK NVLANSIWGS 720
  721 SLRKNASGNK RSGVIETVDD KLKDIVGQTS RTVTPAPN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [487-656]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGLPMKNKAE TTTEEDSENP SDWQRNSFIR DMIMKRNSDK VEYKIVHDDP ASDDILDNIN  60
   61 HNGSALLIEV FTALLRLFIN EEGDWSCIVV ENWIIDDKGV LMERKDERGE GEAKQKRNAH 120
  121 GYFLQDKEKI DNLKDTLKEN ATEVQKESDA KNETNSESDS KSDSDSEERD 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [657-1264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKLEKCLNYR NVNWIERLTK RQFNNSYWLI ILLGVLEDCR HLPMYTEFID SFIEKIIPKD  60
   61 ISATQLPKQL WRNFCRKLSF SDKVNALWIL VDLVSHFSPD IKAAVDDSME LCGQIRSERF 120
  121 KVARELKTEA AVLSNLQGDL QAIQEKLNKT DENTPSADGA DKKDDSESNS EPIDLIIIEK 180
  181 KQKLIEEQDK KVQALQSDKN FLDNCLFEND LQRLKPLGLD RYGNRYFWLD HNGVPFPQYP 240
  241 AGMNETPKSN NSLSYHSGRL LIQGPKASSA KFFLNVSDEQ LSNWQKIRNS EGISEATREV 300
  301 FGISKTSSGS YNYVENGIEV ELLDSNDRVN PLIELTPIQK KIMDETPSRL LLSPDQWYCI 360
  361 DKLEDLSRIM DWLDNWGRKE HDLLRQIRPI MERIKSSLSL RDHALSLTAF TKNEEKLLKE 420
  421 LENNEFTENE LNVDSMDVDD KNSGVKSEVD VQVDAEEKRE AVIDEKLEVI ADELMKLDDS 480
  481 SKTRNVLNRI QELEDQRDEL LEQKKSIINS QRPGARILAR SERKRTKISR GNKVNKQIEI 540
  541 LTDLVNYRHF KAMEDVIAWK NVLANSIWGS SLRKNASGNK RSGVIETVDD KLKDIVGQTS 600
  601 RTVTPAPN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.29
Match: 2oevA
Description: No description for 2oevA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle