| Protein: | PRP43 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 767 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP43.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..753] | [1..753] |
|
|
0.0 | [36..759] | [4..726] |
|
|
0.0 | [20..756] | [3..735] |
|
|
0.0 | [3..754] | [10..768] |
|
|
0.0 | [3..754] | [10..768] |
|
|
0.0 | [68..748] | [47..721] |
|
|
0.0 | [3..743] | [43..783] |
|
Region A: Residues: [1-70] |
1 11 21 31 41 51
| | | | | |
1 MGSKRRFSSE HPDPVETSIP EQAAEIAEEL SKQHPLPSEE PLVHHDAGEF KGLQRHHTSA 60
61 EEAQKLEDGK
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [71-273] |
1 11 21 31 41 51
| | | | | |
1 INPFTGREFT PKYVDILKIR RELPVHAQRD EFLKLYQNNQ IMVFVGETGS GKTTQIPQFV 60
61 LFDEMPHLEN TQVACTQPRR VAAMSVAQRV AEEMDVKLGE EVGYSIRFEN KTSNKTILKY 120
121 MTDGMLLREA MEDHDLSRYS CIILDEAHER TLATDILMGL LKQVVKRRPD LKIIIMSATL 180
181 DAEKFQRYFN DAPLLAVPGR TYP
|
| Detection Method: | |
| Confidence: | 61.69897 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [274-453] |
1 11 21 31 41 51
| | | | | |
1 VELYYTPEFQ RDYLDSAIRT VLQIHATEEA GDILLFLTGE DEIEDAVRKI SLEGDQLVRE 60
61 EGCGPLSVYP LYGSLPPHQQ QRIFEPAPES HNGRPGRKVV ISTNIAETSL TIDGIVYVVD 120
121 PGFSKQKVYN PRIRVESLLV SPISKASAQQ RAGRAGRTRP GKCFRLYTEE AFQKELIEQS 180
181
|
| Detection Method: | |
| Confidence: | 61.69897 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [454-523] |
1 11 21 31 41 51
| | | | | |
1 YPEILRSNLS STVLELKKLG IDDLVHFDFM DPPAPETMMR ALEELNYLAC LDDEGNLTPL 60
61 GRLASQFPLD
|
| Detection Method: | |
| Confidence: | 7.23 |
| Match: | 1jr3D |
| Description: | delta subunit; delta subunit of DNA polymerase III, N-domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [524-666] |
1 11 21 31 41 51
| | | | | |
1 PMLAVMLIGS FEFQCSQEIL TIVAMLSVPN VFIRPTKDKK RADDAKNIFA HPDGDHITLL 60
61 NVYHAFKSDE AYEYGIHKWC RDHYLNYRSL SAADNIRSQL ERLMNRYNLE LNTTDYESPK 120
121 YFDNIRKALA SGFFMQVAKK RSG
|
| Detection Method: | |
| Confidence: | 7.23 |
| Match: | 1jr3D |
| Description: | delta subunit; delta subunit of DNA polymerase III, N-domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [667-767] |
1 11 21 31 41 51
| | | | | |
1 AKGYITVKDN QDVLIHPSTV LGHDAEWVIY NEFVLTSKNY IRTVTSVRPE WLIEIAPAYY 60
61 DLSNFQKGDV KLSLERIKEK VDRLNELKQG KNKKKSKHSK K
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
