| Protein: | PRP43 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 767 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP43.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..753] | [1..753] |
|
|
0.0 | [36..759] | [4..726] |
|
|
0.0 | [20..756] | [3..735] |
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0.0 | [3..754] | [10..768] |
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0.0 | [3..754] | [10..768] |
|
|
0.0 | [68..748] | [47..721] |
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0.0 | [3..743] | [43..783] |
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Region A: Residues: [1-70] |
1 11 21 31 41 51
| | | | | |
1 MGSKRRFSSE HPDPVETSIP EQAAEIAEEL SKQHPLPSEE PLVHHDAGEF KGLQRHHTSA 60
61 EEAQKLEDGK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.557 | a.77.1 | DEATH domain |
| View | Download | 0.517 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.359 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.371 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.377 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.337 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.335 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.317 | a.28.1 | ACP-like |
| View | Download | 0.293 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.278 | a.28.1 | ACP-like |
| View | Download | 0.273 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.255 | d.58.17 | Metal-binding domain |
| View | Download | 0.250 | a.64.1 | Saposin |
| View | Download | 0.250 | d.45.1 | ClpS-like |
| View | Download | 0.241 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.236 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.222 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.215 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.214 | d.2.1 | Lysozyme-like |
| View | Download | 0.212 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.206 | a.28.1 | ACP-like |
| View | Download | 0.205 | a.77.1 | DEATH domain |
| View | Download | 0.205 | d.58.18 | Regulatory domain in the aminoacid metabolism |
|
Region A: Residues: [71-273] |
1 11 21 31 41 51
| | | | | |
1 INPFTGREFT PKYVDILKIR RELPVHAQRD EFLKLYQNNQ IMVFVGETGS GKTTQIPQFV 60
61 LFDEMPHLEN TQVACTQPRR VAAMSVAQRV AEEMDVKLGE EVGYSIRFEN KTSNKTILKY 120
121 MTDGMLLREA MEDHDLSRYS CIILDEAHER TLATDILMGL LKQVVKRRPD LKIIIMSATL 180
181 DAEKFQRYFN DAPLLAVPGR TYP
|
| Detection Method: | |
| Confidence: | 61.69897 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [274-453] |
1 11 21 31 41 51
| | | | | |
1 VELYYTPEFQ RDYLDSAIRT VLQIHATEEA GDILLFLTGE DEIEDAVRKI SLEGDQLVRE 60
61 EGCGPLSVYP LYGSLPPHQQ QRIFEPAPES HNGRPGRKVV ISTNIAETSL TIDGIVYVVD 120
121 PGFSKQKVYN PRIRVESLLV SPISKASAQQ RAGRAGRTRP GKCFRLYTEE AFQKELIEQS 180
181
|
| Detection Method: | |
| Confidence: | 61.69897 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [454-523] |
1 11 21 31 41 51
| | | | | |
1 YPEILRSNLS STVLELKKLG IDDLVHFDFM DPPAPETMMR ALEELNYLAC LDDEGNLTPL 60
61 GRLASQFPLD
|
| Detection Method: | |
| Confidence: | 7.23 |
| Match: | 1jr3D |
| Description: | delta subunit; delta subunit of DNA polymerase III, N-domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [524-666] |
1 11 21 31 41 51
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1 PMLAVMLIGS FEFQCSQEIL TIVAMLSVPN VFIRPTKDKK RADDAKNIFA HPDGDHITLL 60
61 NVYHAFKSDE AYEYGIHKWC RDHYLNYRSL SAADNIRSQL ERLMNRYNLE LNTTDYESPK 120
121 YFDNIRKALA SGFFMQVAKK RSG
|
| Detection Method: | |
| Confidence: | 7.23 |
| Match: | 1jr3D |
| Description: | delta subunit; delta subunit of DNA polymerase III, N-domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [667-767] |
1 11 21 31 41 51
| | | | | |
1 AKGYITVKDN QDVLIHPSTV LGHDAEWVIY NEFVLTSKNY IRTVTSVRPE WLIEIAPAYY 60
61 DLSNFQKGDV KLSLERIKEK VDRLNELKQG KNKKKSKHSK K
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.548 | 0.044 | mitochondrion | a.118.8 | TPR-like |
| View | Download | 0.569 | 0.013 | pre-mRNA splicing factor activity | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.752 | 0.008 | pre-mRNA splicing factor activity | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.725 | 0.004 | pre-mRNA splicing factor activity | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.534 | N/A | N/A | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.480 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.413 | N/A | N/A | a.60.13 | Putative methyltransferase TM0872, insert domain |
| View | Download | 0.401 | N/A | N/A | d.15.4 | 2Fe-2S ferredoxin-like |
| View | Download | 0.394 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.384 | N/A | N/A | a.2.3 | Chaperone J-domain |
| View | Download | 0.363 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.354 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.344 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.335 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.313 | N/A | N/A | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.308 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.308 | N/A | N/A | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.296 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.289 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.282 | N/A | N/A | a.24.11 | Bacterial GAP domain |
| View | Download | 0.278 | N/A | N/A | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.239 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.238 | N/A | N/A | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.237 | N/A | N/A | b.82.4 | Regulatory protein AraC |
| View | Download | 0.235 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.233 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.233 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.229 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.228 | N/A | N/A | d.58.9 | RuBisCO, large subunit, small (N-terminal) domain |
| View | Download | 0.224 | N/A | N/A | a.7.8 | GAT domain |
| View | Download | 0.224 | N/A | N/A | c.23.1 | CheY-like |
| View | Download | 0.222 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.220 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.218 | N/A | N/A | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.218 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.208 | N/A | N/A | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.205 | N/A | N/A | a.139.1 | Type I dockerin domain |
| View | Download | 0.205 | N/A | N/A | d.29.1 | Ribosomal protein L31e |
| View | Download | 0.205 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
