| Protein: | ARC1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 376 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARC1.
| Description | E-value | Query Range |
Subject Range |
|
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6.0E-89 | [1..376] | [1..375] |
|
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3.0E-67 | [4..375] | [83..449] |
|
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2.0E-66 | [2..376] | [38..409] |
|
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1.0E-57 | [2..376] | [82..440] |
|
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3.0E-52 | [6..360] | [67..434] |
|
|
6.0E-52 | [132..376] | [76..310] |
|
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3.0E-51 | [202..376] | [2..166] |
|
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3.0E-51 | [133..376] | [77..310] |
|
Region A: Residues: [1-139] |
1 11 21 31 41 51
| | | | | |
1 MSDLVTKFES LIISKYPVSF TKEQSAQAAQ WESVLKSGQI QPHLDQLNLV LRDNTFIVST 60
61 LYPTSTDVHV FEVALPLIKD LVASSKDVKS TYTTYRHILR WIDYMQNLLE VSSTDKLEIN 120
121 HDLDLPHEVI EKKKKAPAG
|
| Detection Method: |  |
| Confidence: | 18.221849 |
| Match: | 1jlvA_ |
| Description: | Class delta GST |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.24470496646396 | bayes_pls_golite062009 |
| catalytic activity | 0.963623964325467 | bayes_pls_golite062009 |
| protein binding | 0.608998866513518 | bayes_pls_golite062009 |
| transferase activity, transferring alkyl or aryl (other than methyl) groups | 0.44372379417457 | bayes_pls_golite062009 |
| transferase activity | 0.352222179598631 | bayes_pls_golite062009 |
| transporter activity | 0.343837470835258 | bayes_pls_golite062009 |
| glutathione transferase activity | 0.20688408808374 | bayes_pls_golite062009 |
| transcription regulator activity | 0.184452716814807 | bayes_pls_golite062009 |
| nucleic acid binding | 0.17259853770512 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.141575430891772 | bayes_pls_golite062009 |
|
Region A: Residues: [140-198] |
1 11 21 31 41 51
| | | | | |
1 GAADAAAKAD EDVSKKAKKQ DHPRGKPDEE TLKKLREEAK AKKAAKKAAN AKQQQEQQN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.386 | a.39.1 | EF-hand |
| View | Download | 0.396 | a.4.1 | Homeodomain-like |
| View | Download | 0.389 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.415 | a.5.2 | UBA-like |
| View | Download | 0.547 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.385 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.372 | g.15.1 | Ovomucoid/PCI-1 like inhibitors |
| View | Download | 0.340 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.323 | a.4.1 | Homeodomain-like |
| View | Download | 0.305 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.286 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.285 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.285 | a.153.1 | Nuclear receptor coactivator interlocking domain |
| View | Download | 0.283 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.267 | a.77.1 | DEATH domain |
| View | Download | 0.266 | a.4.1 | Homeodomain-like |
| View | Download | 0.249 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.247 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.212 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.203 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.203 | a.2.7 | tRNA-binding arm |
| Term | Confidence | Notes |
| ligase activity, forming carbon-oxygen bonds | 7.22739538544605 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 7.22739538544605 | bayes_pls_golite062009 |
| aminoacyl-tRNA ligase activity | 7.21678612388154 | bayes_pls_golite062009 |
| ligase activity | 5.98606099120849 | bayes_pls_golite062009 |
| isoleucine-tRNA ligase activity | 3.76808520367507 | bayes_pls_golite062009 |
| catalytic activity | 1.41356903593784 | bayes_pls_golite062009 |
| arginine-tRNA ligase activity | 1.15514226827836 | bayes_pls_golite062009 |
| binding | 1.12496911405027 | bayes_pls_golite062009 |
| protein binding | 0.341429946042706 | bayes_pls_golite062009 |
|
Region A: Residues: [199-376] |
1 11 21 31 41 51
| | | | | |
1 KAPEKPKPSA IDFRVGFIQK AIKHPDADSL YVSTIDVGDE EGPRTVCSGL VKHFPLDAMQ 60
61 ERYVVVVCNL KPVNMRGIKS TAMVLCGSND DKVEFVEPPK DSKAGDKVFF EGFGDEAPMK 120
121 QLNPKKKIWE HLQPHFTTND GLEVIFKDEE EKDHPVRKLT NAKGESFKVA SIANAQVR
|
| Detection Method: | |
| Confidence: | 422.09691 |
| Match: | 1eujA_ |
| Description: | EMAP II |
Matching Structure (courtesy of the PDB): |
|
