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View Structure Prediction Details

Protein: GAL83
Organism: Saccharomyces cerevisiae
Length: 417 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAL83.

Description E-value Query
Range		 Subject
Range
GAL83_YEAST - SNF1 protein kinase subunit beta-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL83...
GAL83 - One of three possible beta-subunits of the Snf1 kinase complex, allows nuclear localization of the S...
 0.0 [1..417] [1..417]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 3.0E-92 [9..417] [24..486]
gi|7433849 - pir||S76095 hypothetical protein - Synechocystis sp. (strain PCC 6803)
GLGB_SYNY3 - 1,4-alpha-glucan branching enzyme GlgB OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=glgB PE=3 ...
GLGB_SYNY3 - 1,4-alpha-glucan branching enzyme GlgB OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=...
 2.0E-67 [124..380] [105..375]
gi|25286746 - pir||AG1895 1,4-alpha-glucan branching enzyme [imported] - Nostoc sp. (strain PCC 7120)
GLGB_NOSS1 - 1,4-alpha-glucan branching enzyme GlgB OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=glgB PE=3 SV=1
 1.0E-63 [126..380] [107..376]
GLGB_AQUAE - 1,4-alpha-glucan branching enzyme GlgB OS=Aquifex aeolicus GN=glgB PE=3 SV=1
GLGB_AQUAE - 1,4-alpha-glucan branching enzyme GlgB OS=Aquifex aeolicus (strain VF5) GN=glgB PE=3 SV=1
 4.0E-63 [136..380] [15..253]
GLGB_BACCL - 1,4-alpha-glucan branching enzyme GlgB OS=Bacillus caldolyticus GN=glgB PE=1 SV=1
 1.0E-62 [145..380] [21..251]
GLGB2_STRCO, GLB... - 1,4-alpha-glucan branching enzyme GlgB 2 OS=Streptomyces coelicolor GN=glgB2 PE=3 SV=2, (Q59832) 1,4...
GLGB2_STRCO - 1,4-alpha-glucan branching enzyme GlgB 2 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M...
 6.0E-62 [114..377] [108..360]
GLGB_SYNP6 - 1,4-alpha-glucan branching enzyme GlgB OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 140...
GLGB_SYNE7 - 1,4-alpha-glucan branching enzyme GlgB OS=Synechococcus elongatus (strain PCC 7942) GN=glgB PE=1 SV=...
gi|97560 - pir||JQ0550 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) - Synechococcus sp. (strain PCC 7942)
 1.0E-61 [126..380] [113..382]

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Predicted Domain #1
Region A:
Residues: [1-130] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGDNPENKD ASMLDVSDAA SNTTINGKHS ADSTNEASLA YTFSQMNVDN PNELEPQHPL  60
   61 RHKSSLIFND DDDDEIPPYS NHAENGSGET FDSDDDIDAS SSSSIDSNEG DIHDADMTGN 120
  121 TLQKMDYQPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-225] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQPDSLQNQG FQQQQEQQQG TVEGKKGRAM MFPVDITWQQ GGNKVYVTGS FTGWRKMIGL  60
   61 VPVPGQPGLM HVKLQLPPGT HRFRFIVDNE LRFSD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.69897
Match: 1eh9A_
Description: Glycosyltrehalose trehalohydrolase, N-terminal domain N; Glycosyltrehalose trehalohydrolase; Glycosyltrehalose trehalohydrolase, central domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
AMP-activated protein kinase activity 4.78975226545815 bayes_pls_golite062009
binding 2.65544526722793 bayes_pls_golite062009
cation transmembrane transporter activity 1.69105818607475 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 1.66390525860632 bayes_pls_golite062009
kinase activity 1.64560031716993 bayes_pls_golite062009
voltage-gated potassium channel activity 1.62236890256061 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.53194692728729 bayes_pls_golite062009
protein binding 1.50286160643298 bayes_pls_golite062009
protein kinase activity 1.44964326848891 bayes_pls_golite062009
ion transmembrane transporter activity 1.39709424453076 bayes_pls_golite062009
transferase activity 1.26709925711174 bayes_pls_golite062009
cation channel activity 1.10928620793874 bayes_pls_golite062009
ligand-gated ion channel activity 1.08920948133636 bayes_pls_golite062009
ligand-gated channel activity 1.08920948133636 bayes_pls_golite062009
gated channel activity 0.9831902560942 bayes_pls_golite062009
ion channel activity 0.88499192552319 bayes_pls_golite062009
protein serine/threonine kinase activity 0.726369450752205 bayes_pls_golite062009
cytoskeletal protein binding 0.60798225319459 bayes_pls_golite062009
actin binding 0.54002000529721 bayes_pls_golite062009
enzyme binding 0.37496592438035 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [226-417] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLPTATDQMG NFVNYMEVSA PPDWGNEPQQ HLAEKKANHV DDSKLSKRPM SARSRIALEI  60
   61 EKEPDDMGDG YTRFHDETPA KPNLEYTQDI PAVFTDPNVM EQYYLTLDQQ QNNHQNMAWL 120
  121 TPPQLPPHLE NVILNSYSNA QTDNTSGALP IPNHVILNHL ATSSIKHNTL CVASIVRYKQ 180
  181 KYVTQILYTP LQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.69897
Match: 1eh9A_
Description: Glycosyltrehalose trehalohydrolase, N-terminal domain N; Glycosyltrehalose trehalohydrolase; Glycosyltrehalose trehalohydrolase, central domain
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle