| Protein: | PAC11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 533 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAC11.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..533] | [1..533] |
|
|
5.0E-82 | [161..528] | [879..1247] |
|
|
3.0E-81 | [2..530] | [836..1311] |
|
|
8.0E-79 | [4..527] | [39..566] |
|
|
2.0E-75 | [4..527] | [39..566] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MERLKQLEEK RRQLKELRER RKQASLFPGS ETMGHHPTEV HAKATMVSVS VQTDMEEGSK 60
61 IQEPQSAYLR RKEVITYDKG IQTDQIEEEQ LQENENHTTT DAVAIETTAA DENNKDKAEN 120
121 DQPRLELAKP FLVEEAAATL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.232 | 0.979 | microtubule motor activity | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
|
Region A: Residues: [141-533] |
1 11 21 31 41 51
| | | | | |
1 SNASFARLET EVSASGQQAP SNMQQDKDNL MQWNMVSENL QSETDCDCIA QEYDPGKGVL 60
61 VVVYLRLPPA DLQYASSEAA WSVVNVVKCD NASGRNGLLI DMVEFRGTRI MTATILRRYH 120
121 PESNVISILL ATLTGKIILY ELRLKQKKPE TPVVYVVQRN MVARHYFQHP VVAVIETSSV 180
181 QDQERVLVAA DNGNIMELSC LDLTVLRKPQ QLRPVPLSQL LSLENDTCTY TERLQRLAKF 240
241 DEVGIACMAY TSEDPQYVWI GGEDGGIYKV FWDQPGPLYL SLDNNGFQPA ENHSTRVTGL 300
301 EFHWDDARRL MLLLSCSTDW TVRLWDARAG KAIIGAPLLL GGPVLRARWL EKNNGGENSR 360
361 TLRCQVWCAD GRLVVVNWAF DAKTSLYTAT VIS
|
| Detection Method: | |
| Confidence: | 37.69897 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| tubulin binding | 2.76945430061825 | bayes_pls_golite062009 |
| microtubule binding | 2.72684103222924 | bayes_pls_golite062009 |
| binding | 2.56763106794721 | bayes_pls_golite062009 |
| dynein binding | 1.73730057055973 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.6857070194499 | bayes_pls_golite062009 |
| protein binding | 1.11897341394404 | bayes_pls_golite062009 |
| dynactin binding | 1.09205354470481 | bayes_pls_golite062009 |
| transcription repressor activity | 1.05679861435905 | bayes_pls_golite062009 |
| microtubule plus-end binding | 1.01166033978052 | bayes_pls_golite062009 |
| transcription regulator activity | 0.831480546979987 | bayes_pls_golite062009 |
| myosin binding | 0.79466819364522 | bayes_pls_golite062009 |
| transporter activity | 0.692270256454453 | bayes_pls_golite062009 |
| nucleic acid binding | 0.626057815566445 | bayes_pls_golite062009 |
| dynein intermediate chain binding | 0.443846546939402 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.428715007921149 | bayes_pls_golite062009 |
| DNA binding | 0.387799300258449 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.375646066797591 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.136160694936939 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.121183207943714 | bayes_pls_golite062009 |
| actin binding | 0.120045107841246 | bayes_pls_golite062009 |
| structural molecule activity | 0.0588151480189092 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
|
Region A: Residues: [467-533] |
1 11 21 31 41 51
| | | | | |
1 ARAGKAIIGA PLLLGGPVLR ARWLEKNNGG ENSRTLRCQV WCADGRLVVV NWAFDAKTSL 60
61 YTATVIS
|
| Detection Method: | |
| Confidence: | 32.69897 |
| Match: | 1nexB |
| Description: | Cdc4 F-box and linker domains; Cdc4 propeller domain |
Matching Structure (courtesy of the PDB): |
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