| Protein: | ARO80 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 950 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARO80.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..950] | [1..950] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MSAKKRPSGN AAFELPKRRR TYQACISCRS RKVKCDLGPV DNPHDPPCAR CKRELKKCIF 60
61 SSNKGTSNDL PPNSINAISL PSLGKSKQE
|
| Detection Method: |  |
| Confidence: | 8.95 |
| Match: | 1d66A |
| Description: | Gal4; CD2-Gal4 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.34861813464065 | bayes_pls_golite062009 |
| DNA binding | 4.03985756894684 | bayes_pls_golite062009 |
| nucleic acid binding | 3.97978190843512 | bayes_pls_golite062009 |
| transcription factor activity | 2.87348461329489 | bayes_pls_golite062009 |
| binding | 2.82809978070212 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.77469997789536 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.70904317608141 | bayes_pls_golite062009 |
| transcription activator activity | 2.1512787242583 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.08956709478484 | bayes_pls_golite062009 |
|
Region A: Residues: [90-950] |
1 11 21 31 41 51
| | | | | |
1 IQNDSTSPIL SDVPLSRKGI SSEKSFKSEG MKWKLELSSM QNALEFLAQA AGTVAKEGAK 60
61 EIIKEKSTTP KPLKSSLDAT NKSATDEGLK RLSKSDSTNT LYENTADMLN HTLNTNRKTS 120
121 QLMEEIGKVR PPPTRKIDDF DYIGPDSLLT KEEAIELIEA FFLTMHPFFP NIPLQLHDPK 180
181 ELAEYPILFC AILTVSARYH PFDTLGLDNG EDGMRHIEVH DKLWVYCQKL ISQTIWAEAS 240
241 TRSIGTVLAF IIFTEWNPRS IHYKWSDYAN DPELNNVNAR GSKNISTRKD EEGLTGVGAI 300
301 RRSDRMSWML TGSAVRLAQD MGFIENSSKV FIVTHISETT SAMNMNQRSL LAESFSVLNL 360
361 NLGKIENDGN ESNEDYLGNE KFYLNEILPD EESKLRWKRV FENSENDHDN EKNFLTDWER 420
421 EFLNDEYVLY YSNKKDDTNL AQNHIPPFPL RFSFAQRAKI EIIRILSIAY ETIYCEKNKR 480
481 KLATTDQRHN LSVLSVFSPL IEGWLSNYRE LLVPLSDVPF SLADRKNKKQ IFDNIDRING 540
541 ESIITDFNYC QLYIFSLALQ VDGKTSRLNM NEIVTSARYV ELAYRSAKEI LSSAKRVSRQ 600
601 GMLKYMPVRW VIRIIRSIAF IVKCYLTLTG SELATNPDAR NILKLSAISV DETFDIIRDT 660
661 AVTLKEATPD ELHLCQRYAA ILMYLCTEMK LRKKSYLERP PLLRDGTTPL ESNRESSLEG 720
721 QDLTKKPIFS KRIGYNKTET TFEPSERPLT EEINSNSQNS NDTSSKGIVD PFVEQNNDIT 780
781 TALLNNELFQ GPSLSDEVTD WFGASEDIGL EFVEPWTELI EQRYMQCGDG DNNNFENLYN 840
841 LFVNSNNINN DINNSRPITR K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [291-415] |
1 11 21 31 41 51
| | | | | |
1 FDTLGLDNGE DGMRHIEVHD KLWVYCQKLI SQTIWAEAST RSIGTVLAFI IFTEWNPRSI 60
61 HYKWSDYAND PELNNVNARG SKNISTRKDE EGLTGVGAIR RSDRMSWMLT GSAVRLAQDM 120
121 GFIEN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [416-535] |
1 11 21 31 41 51
| | | | | |
1 SSKVFIVTHI SETTSAMNMN QRSLLAESFS VLNLNLGKIE NDGNESNEDY LGNEKFYLNE 60
61 ILPDEESKLR WKRVFENSEN DHDNEKNFLT DWEREFLNDE YVLYYSNKKD DTNLAQNHIP 120
121
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [536-726] |
1 11 21 31 41 51
| | | | | |
1 PFPLRFSFAQ RAKIEIIRIL SIAYETIYCE KNKRKLATTD QRHNLSVLSV FSPLIEGWLS 60
61 NYRELLVPLS DVPFSLADRK NKKQIFDNID RINGESIITD FNYCQLYIFS LALQVDGKTS 120
121 RLNMNEIVTS ARYVELAYRS AKEILSSAKR VSRQGMLKYM PVRWVIRIIR SIAFIVKCYL 180
181 TLTGSELATN P
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [727-795] |
1 11 21 31 41 51
| | | | | |
1 DARNILKLSA ISVDETFDII RDTAVTLKEA TPDELHLCQR YAAILMYLCT EMKLRKKSYL 60
61 ERPPLLRDG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [796-865] |
1 11 21 31 41 51
| | | | | |
1 TTPLESNRES SLEGQDLTKK PIFSKRIGYN KTETTFEPSE RPLTEEINSN SQNSNDTSSK 60
61 GIVDPFVEQN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [866-950] |
1 11 21 31 41 51
| | | | | |
1 NDITTALLNN ELFQGPSLSD EVTDWFGASE DIGLEFVEPW TELIEQRYMQ CGDGDNNNFE 60
61 NLYNLFVNSN NINNDINNSR PITRK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
