| Protein: | XRS2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 854 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XRS2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..854] | [1..854] |
|
Region A: Residues: [1-157] |
1 11 21 31 41 51
| | | | | |
1 MWVVRYQNTL EDGSISFISC CLQAFKTYSI GRSSKNPLII KNDKSISRQH ITFKWEINNS 60
61 SDLKHSSLCL VNKGKLTSLN KKFMKVGETF TINASDVLKS TIIELGTTPI RIEFEWINEV 120
121 WNIPPHLTQF RTMLSEYGIS TEISINDIPA NLMISDY
|
| Detection Method: |  |
| Confidence: | 9.468521 |
| Match: | PF00498 |
| Description: | FHA domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 3.29282091000252 | bayes_pls_golite062009 |
| protein binding | 2.10386508653975 | bayes_pls_golite062009 |
| histone binding | 1.9804501088198 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.80379362156554 | bayes_pls_golite062009 |
| DNA binding | 1.75711393068958 | bayes_pls_golite062009 |
| nucleic acid binding | 1.68733623580238 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.64875926701369 | bayes_pls_golite062009 |
| transcription regulator activity | 1.58213576302578 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.32517364912417 | bayes_pls_golite062009 |
| chromatin binding | 1.24086020252344 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.23750705623221 | bayes_pls_golite062009 |
| transforming growth factor beta receptor, cytoplasmic mediator activity | 1.09317005113308 | bayes_pls_golite062009 |
| transmembrane receptor protein serine/threonine kinase signaling protein activity | 0.896922420561378 | bayes_pls_golite062009 |
| SMAD binding | 0.724800831671259 | bayes_pls_golite062009 |
| hydrolase activity | 0.721388646103233 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.670370530131427 | bayes_pls_golite062009 |
| transcription factor activity | 0.539168752590071 | bayes_pls_golite062009 |
| transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity | 0.537420543086991 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.520434329676854 | bayes_pls_golite062009 |
| transcription activator activity | 0.444903517674531 | bayes_pls_golite062009 |
| ubiquitin binding | 0.306130468133543 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.295271541480997 | bayes_pls_golite062009 |
| small conjugating protein binding | 0.217876362477623 | bayes_pls_golite062009 |
| damaged DNA binding | 0.182219412947843 | bayes_pls_golite062009 |
| receptor signaling protein activity | 0.00902288416721542 | bayes_pls_golite062009 |
| promoter binding | 0.00673732596278498 | bayes_pls_golite062009 |
|
Region A: Residues: [158-487] |
1 11 21 31 41 51
| | | | | |
1 PKSEDNSIRE LYALVSTIPM KKSRFLMELC NTLLPTSKTN LKFDEMWNDM ISNPEYNVFD 60
61 FDPNILLSKF MRLNNIRVLT TIKSEPRLSS LLRTFNINLF AFDNIDSLYK YVDSLEASTE 120
121 YLILTTTDKK ENGKILCTIK TMLTSIIDGT LSAVINMKGA SSRTLDNGKF DQISEGMSTI 180
181 LKTSRAPEVE ASPVVSKKRK LNRRRVLPLD SLDFFAGGLS TKTLSENRSL TDAKRLNCGA 240
241 ESKTVISSPN IAEADEKHAP FLQNALKPTE DIGKKSGHSS PGAIIVSSPN LGTVNTSEDS 300
301 LDKSLQSHKL PQPSLPEVAG IGSQTISSNS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [488-854] |
1 11 21 31 41 51
| | | | | |
1 ADYETAAVNS MDDAEVTKNF RVNHHQNIEQ PSKNIRKLSN YSREISSPLQ ENCKSPVKEL 60
61 SIKEKSGTPH AFVEAIQETK NREVKRVKST IVELKDEELS EEAINQLKNL AIVEPSNNLL 120
121 RKSFDSEGNK TSRTTEKWEN SLMEPEWHKR KNFKTFVKVR PKSKAHKEEG KNNTQSSDFI 180
181 RNAAFLITRN YVPLKKYSKK DTTTKWGTEE NEDMFALTEM ERFGSNTFMS DNINSNTIQK 240
241 RSQALNRFTN EDSSNEGEED SFSFSRCSGT AASVQPLKNK IFITDEDDLG DIDDKSDRLN 300
301 HRENNRNLFV VKEMNLRPNL SEECSKQSRH SRSATSRSRG SFGASNNGDG DDDDDDGPKF 360
361 TFKRRKG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [498-716] |
1 11 21 31 41 51
| | | | | |
1 MDDAEVTKNF RVNHHQNIEQ PSKNIRKLSN YSREISSPLQ ENCKSPVKEL SIKEKSGTPH 60
61 AFVEAIQETK NREVKRVKST IVELKDEELS EEAINQLKNL AIVEPSNNLL RKSFDSEGNK 120
121 TSRTTEKWEN SLMEPEWHKR KNFKTFVKVR PKSKAHKEEG KNNTQSSDFI RNAAFLITRN 180
181 YVPLKKYSKK DTTTKWGTEE NEDMFALTEM ERFGSNTFM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [717-854] |
1 11 21 31 41 51
| | | | | |
1 SDNINSNTIQ KRSQALNRFT NEDSSNEGEE DSFSFSRCSG TAASVQPLKN KIFITDEDDL 60
61 GDIDDKSDRL NHRENNRNLF VVKEMNLRPN LSEECSKQSR HSRSATSRSR GSFGASNNGD 120
121 GDDDDDDGPK FTFKRRKG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
