| Protein: | UTP4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 776 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTP4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..684] | [855..1479] |
|
|
0.0 | [2..548] | [823..1316] |
|
Region A: Residues: [1-73] |
1 11 21 31 41 51
| | | | | |
1 MSSSLLSVLK EKSRSLKIRN KPVKMTSQER MIVHRCRFVD FTPATITSLA FSHKSNINKL 60
61 TPSDLRLAIG RSN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.669 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.598 | a.39.1 | EF-hand |
| View | Download | 0.502 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.531 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.456 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.436 | a.59.1 | PAH2 domain |
| View | Download | 0.429 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.429 | a.65.1 | Annexin |
| View | Download | 0.384 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.382 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.371 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.358 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.353 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.353 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.350 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.349 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.345 | a.28.1 | ACP-like |
| View | Download | 0.333 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.330 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.326 | a.4.1 | Homeodomain-like |
| View | Download | 0.321 | d.29.1 | Ribosomal protein L31e |
| View | Download | 0.313 | a.3.1 | Cytochrome c |
| View | Download | 0.309 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.308 | a.74.1 | Cyclin-like |
| View | Download | 0.304 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.299 | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.296 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.279 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.276 | a.64.1 | Saposin |
| View | Download | 0.275 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.271 | a.77.1 | DEATH domain |
| View | Download | 0.253 | a.77.1 | DEATH domain |
| View | Download | 0.234 | a.39.1 | EF-hand |
| View | Download | 0.230 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.215 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.214 | a.24.4 | Hemerythrin |
| View | Download | 0.214 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.208 | a.77.1 | DEATH domain |
| Term | Confidence | Notes |
| snoRNA binding | 6.03079504484743 | bayes_pls_golite062009 |
| 3.41022148055944 | bayes_pls_golite062009 | |
| RNA binding | 3.0829625416797 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30918780727915 | bayes_pls_golite062009 |
| protein binding | 2.26925404328312 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.5283366007575 | bayes_pls_golite062009 |
| structural molecule activity | 1.31060431370834 | bayes_pls_golite062009 |
| transcription activator activity | 1.23969853550045 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| actin binding | 0.794986868016276 | bayes_pls_golite062009 |
| transcription repressor activity | 0.658573452658359 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| ligase activity | 0.280267687917718 | bayes_pls_golite062009 |
| tubulin binding | 0.194781260474147 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.182612389752591 | bayes_pls_golite062009 |
| microtubule binding | 0.167936232702449 | bayes_pls_golite062009 |
| mRNA binding | 0.0519838181830878 | bayes_pls_golite062009 |
|
Region A: Residues: [74-166] |
1 11 21 31 41 51
| | | | | |
1 GNIEIWNPRN NWFQEMVIEG GKDRSIEGLC WSNVNGESLR LFSIGGSTVV TEWDLATGLP 60
61 LRNYDCNSGV IWSISINDSQ DKLSVGCDNG TVV
|
| Detection Method: | |
| Confidence: | 79.30103 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [167-504] |
1 11 21 31 41 51
| | | | | |
1 LIDISGGPGV LEHDTILMRQ EARVLTLAWK KDDFVIGGCS DGRIRIWSAQ KNDENMGRLL 60
61 HTMKVDKAKK ESTLVWSVIY LPRTDQIASG DSTGSIKFWD FQFATLNQSF KAHDADVLCL 120
121 TTDTDNNYVF SAGVDRKIFQ FSQNTNKSQK NNRWVNSSNR LLHGNDIRAI CAYQSKGADF 180
181 LVSGGVEKTL VINSLTSFSN GNYRKMPTVE PYSKNVLVNK EQRLVVSWSE STVKIWTMGT 240
241 DSSTEQNYKL VCKLTLKDDQ NISTCSLSPD GQVLVVGRPS TTKVFHLQPV GNKLKVTKLD 300
301 NDLLLRTSTK LVKFIDNSKI VICSCEDDVF IVDLESEE
|
| Detection Method: | |
| Confidence: | 96.24799 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [505-692] |
1 11 21 31 41 51
| | | | | |
1 DEKPQEVELL EVTSTKSSIK VPYINRINHL EVDQNIAVIS RGCGVVDILD LKARISKPLA 60
61 RLNNFITAVH INTSRKSVVV ITADNKIYEF NMNLNSEAEN EDSESVLTQW SKNNTDNLPK 120
121 EWKTLKENCV GIFSDIENSS RLWFWGATWI SRIDFDVDFP INKRRKQKKR THEGLTITDE 180
181 SNFMNDEE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [693-776] |
1 11 21 31 41 51
| | | | | |
1 DDEDDDIDME ISENLNVLLN QGNKIKSTDV QRNEESSGHF FFTDKYKPLL FVDLISSNEL 60
61 AIIERNPLTF HSKQKAFIQP KLVF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.528 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.400 | b.101.1 | Ribonuclease domain of colicin E3 |
| View | Download | 0.463 | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.458 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.360 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.346 | d.9.1 | Interleukin 8-like chemokines |
| View | Download | 0.281 | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.258 | d.169.1 | C-type lectin-like |
| View | Download | 0.242 | b.55.1 | PH domain-like |
| View | Download | 0.229 | b.55.1 | PH domain-like |
| View | Download | 0.222 | g.41.3 | Zinc beta-ribbon |
| View | Download | 0.222 | b.11.1 | gamma-Crystallin-like |
| View | Download | 0.203 | d.17.1 | Cystatin/monellin |
