Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR266C.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [5..476] | [317..784] |
|
|
0.0 | [7..476] | [374..839] |
|
|
0.0 | [3..476] | [172..641] |
|
Region A: Residues: [1-181] |
1 11 21 31 41 51
| | | | | |
1 MSESVKENVT PTRNFRRTQG PQNNTKPHND RKNFRRKQKK NNLSAEPNLT TSSADDTDEE 60
61 NELCVICARK LTYVSLTPCH HKTCHICGFR QRALYNKKSC LICRTENEEV MFTDRIDGDI 120
121 SDKYNFCEKN EKYGINFTSE EVATETLNLL KFFCPLSKDE QVCDFGSFKK YNEHLKSEHN 180
181 R
|
| Detection Method: |  |
| Confidence: | 25.0 |
| Match: | 1meyC_ |
| Description: | Designed zinc finger protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [182-269] |
1 11 21 31 41 51
| | | | | |
1 MICLICATHK HAFPCELEIF TQNQLRNHQT KGNSEGFKGH PMCAFCSGKR FYSDDELYIH 60
61 MRNQHEKCHI CDKMNPASPQ YFKDYNQL
|
| Detection Method: | |
| Confidence: | 15.69897 |
| Match: | 2gliA_ |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [270-347] |
1 11 21 31 41 51
| | | | | |
1 FDHFKHSHYV CTVQTCLDNK FVVFKDELEL QAHILQEHGN ILKGKPKFFQ SELSTFISAP 60
61 SRVIRERDDY DLPSISSL
|
| Detection Method: | |
| Confidence: | 15.69897 |
| Match: | 2gliA_ |
| Description: | Five-finger GLI1 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.56793851778364 | bayes_pls_golite062009 |
| DNA binding | 3.54020314355238 | bayes_pls_golite062009 |
| nucleic acid binding | 3.5199046417859 | bayes_pls_golite062009 |
| binding | 2.67810465561307 | bayes_pls_golite062009 |
| transcription factor activity | 2.55187755119308 | bayes_pls_golite062009 |
| transcription activator activity | 1.42994934871119 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.39866271783743 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| RNA binding | 0.938541269618281 | bayes_pls_golite062009 |
| transcription repressor activity | 0.929401148394889 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.72547620392762 | bayes_pls_golite062009 |
| transcription factor binding | 0.70656389852666 | bayes_pls_golite062009 |
| chromatin binding | 0.67474205629207 | bayes_pls_golite062009 |
| mRNA binding | 0.529908848614478 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.26938915748667 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.0675941993292299 | bayes_pls_golite062009 |
|
Region A: Residues: [348-473] |
1 11 21 31 41 51
| | | | | |
1 PGSSSGSRTD VRSASSPEES RLRLAERAKY YLENSKEDFN KFSSYNEDYS KGRLSAEKLL 60
61 ESYKLLFTKP NADVYLLIHN LAETFPKNSS KYNNLNAIYE QREQTLARQT SLPSLSSDSS 120
121 LSMSIG
|
| Detection Method: | |
| Confidence: | 9.221849 |
| Match: | 1f2iG_ |
| Description: | ZIF268 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [474-639] |
1 11 21 31 41 51
| | | | | |
1 RGHWGGTNDG GSAGAALGVR NIKNLPTLKS PSASYDPFAT TVKKNTLRPV QNIKRTTPQS 60
61 VSYRTSTNTV AFSPTYLESK KGSSSTSLNN SKDKLKSLNL PQLPPPKPKV QIPGLNRPQI 120
121 ADPKQWGKKS STQDTNVHDN LRELNTTSGG NKKKGKQKQL LFHIGV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
