| Protein: | PCF11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 626 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCF11.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..626] | [1..626] |
|
|
0.0 | [11..620] | [7..575] |
|
|
6.0E-86 | [224..605] | [36..392] |
|
|
3.0E-85 | [236..609] | [38..365] |
|
|
1.0E-83 | [153..618] | [61..488] |
|
|
4.0E-81 | [236..609] | [38..401] |
|
|
3.0E-78 | [153..618] | [1157..1596] |
|
Region A: Residues: [1-117] |
1 11 21 31 41 51
| | | | | |
1 MDHDTEVIVK DFNSILEELT FNSRPIITTL TKLAEENISC AQYFVDAIES RIEKCMPKQK 60
61 LYAFYALDSI CKNVGSPYTI YFSRNLFNLY KRTYLLVDNT TRTKLINMFK LWLNPND
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 3.44539235794744 | bayes_pls_golite062009 |
| transcription regulator activity | 2.34092044533955 | bayes_pls_golite062009 |
| protein binding | 1.97365365208963 | bayes_pls_golite062009 |
| nucleic acid binding | 1.74252996786746 | bayes_pls_golite062009 |
| DNA binding | 1.73786982174918 | bayes_pls_golite062009 |
| transcription factor activity | 1.0565013251721 | bayes_pls_golite062009 |
| clathrin binding | 0.196939581490181 | bayes_pls_golite062009 |
|
Region A: Residues: [118-460] |
1 11 21 31 41 51
| | | | | |
1 TGLPLFEGSA LEKIEQFLIK ASALHQKNLQ AMLPTPTVPL LLRDIDKLTC LTSERLKNQP 60
61 NDEKLKMKLL VLSQLKQELK REKLTLNALK QVQMQLRQVF SQDQQVLQER MRYHELQQQQ 120
121 QQQQQQQQQQ QQQQQQYHET KDMVGSYTQN SNSAIPLFGN NSDTTNQQNS LSSSLFGNIS 180
181 GVESFQEIEK KKSLNKINNL YASLKAEGLI YTPPKESIVT LYKKLNGHSN YSLDSHEKQL 240
241 MKNLPKIPLL NDILSDCKAY FATVNIDVLN NPSLQLSEQT LLQENPIVQN NLIHLLYRSK 300
301 PNKCSVCGKR FGNSESEKLL QNEHLDWHFR INTRIKGSQN TAN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [461-514] |
1 11 21 31 41 51
| | | | | |
1 TGISNSNLNT TTTRKNIQSR NWYLSDSQWA AFKDDEITST KHKNDYTDPH ANKN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [515-626] |
1 11 21 31 41 51
| | | | | |
1 IDKSALNIHA DENDEGSVDN TLGSDRSNEL EIRGKYVVVP ETSQDMAFKC PICKETVTGV 60
61 YDEESGEWVW KNTIEVNGKY FHSTCYHETS QNSSKSNSGK VGLDDLKKLV TK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
