| Protein: | PCF11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 626 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCF11.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..626] | [1..626] |
|
|
0.0 | [11..620] | [7..575] |
|
|
6.0E-86 | [224..605] | [36..392] |
|
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3.0E-85 | [236..609] | [38..365] |
|
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1.0E-83 | [153..618] | [61..488] |
|
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4.0E-81 | [236..609] | [38..401] |
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3.0E-78 | [153..618] | [1157..1596] |
|
Region A: Residues: [1-117] |
1 11 21 31 41 51
| | | | | |
1 MDHDTEVIVK DFNSILEELT FNSRPIITTL TKLAEENISC AQYFVDAIES RIEKCMPKQK 60
61 LYAFYALDSI CKNVGSPYTI YFSRNLFNLY KRTYLLVDNT TRTKLINMFK LWLNPND
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.578 | 0.238 | mRNA cleavage | a.25.1 | Ferritin-like |
| View | Download | 0.666 | 0.039 | mRNA cleavage | a.7.8 | GAT domain |
| View | Download | 0.644 | 0.023 | mRNA cleavage | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.533 | 0.006 | mRNA cleavage | d.164.1 | SMAD MH1 domain |
| View | Download | 0.595 | N/A | N/A | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.525 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.515 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.502 | N/A | N/A | d.65.1 | Hedgehog/DD-pepidase |
| View | Download | 0.488 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.483 | N/A | N/A | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.474 | N/A | N/A | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.469 | N/A | N/A | f.1.1 | Colicin |
| View | Download | 0.467 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.458 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.457 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.452 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.452 | N/A | N/A | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.448 | N/A | N/A | a.149.1 | RNase III endonuclease catalytic domain |
| View | Download | 0.447 | N/A | N/A | c.92.2 | "Helical backbone" metal receptor |
| View | Download | 0.442 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.434 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.426 | N/A | N/A | c.12.1 | Ribosomal proteins L15p and L18e |
| View | Download | 0.415 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.395 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.371 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.365 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.354 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.351 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.350 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.348 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.340 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.338 | N/A | N/A | a.49.1 | C-terminal domain of B transposition protein |
| View | Download | 0.337 | N/A | N/A | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.334 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.334 | N/A | N/A | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.328 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.317 | N/A | N/A | d.189.1 | PX domain |
| View | Download | 0.314 | N/A | N/A | d.79.1 | YjgF-like |
| View | Download | 0.309 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.297 | N/A | N/A | d.110.4 | SNARE-like |
| View | Download | 0.291 | N/A | N/A | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.286 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.286 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.282 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.281 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.281 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.279 | N/A | N/A | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.278 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.276 | N/A | N/A | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.273 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.273 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.273 | N/A | N/A | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.270 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.263 | N/A | N/A | d.189.1 | PX domain |
| View | Download | 0.263 | N/A | N/A | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.262 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.258 | N/A | N/A | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.257 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.255 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.252 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.251 | N/A | N/A | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.251 | N/A | N/A | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.248 | N/A | N/A | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.246 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.246 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.245 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.245 | N/A | N/A | a.95.1 | Influenza virus matrix protein M1 |
| View | Download | 0.242 | N/A | N/A | d.65.1 | Hedgehog/DD-pepidase |
| View | Download | 0.241 | N/A | N/A | d.13.1 | HIT-like |
| View | Download | 0.239 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.239 | N/A | N/A | d.79.1 | YjgF-like |
| View | Download | 0.238 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.237 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.237 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.235 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.232 | N/A | N/A | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.230 | N/A | N/A | d.58.34 | Formiminotransferase domain of formiminotransferase-cyclodeaminase. |
| View | Download | 0.228 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.228 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.227 | N/A | N/A | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.225 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.223 | N/A | N/A | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.223 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.223 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.222 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.220 | N/A | N/A | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.220 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.215 | N/A | N/A | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.214 | N/A | N/A | a.2.5 | Prefoldin |
| View | Download | 0.214 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.213 | N/A | N/A | d.74.4 | Prokaryotic AspRS, insert domain |
| View | Download | 0.211 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.211 | N/A | N/A | d.58.48 | MTH1187-like |
| View | Download | 0.209 | N/A | N/A | d.41.4 | Ribosomal protein L10e |
| View | Download | 0.209 | N/A | N/A | e.20.1 | Heat shock protein 70kD (HSP70), C-terminal substrate-binding fragment |
| View | Download | 0.209 | N/A | N/A | d.58.16 | Poly(A) polymerase, C-terminal domain |
| View | Download | 0.208 | N/A | N/A | a.158.1 | F-box domain |
| View | Download | 0.206 | N/A | N/A | c.61.1 | PRTase-like |
| View | Download | 0.204 | N/A | N/A | d.92.2 | beta-N-acetylhexosaminidase-like domain |
| View | Download | 0.203 | N/A | N/A | a.24.3 | Cytochromes |
| Term | Confidence | Notes |
| binding | 3.44539235794744 | bayes_pls_golite062009 |
| transcription regulator activity | 2.34092044533955 | bayes_pls_golite062009 |
| protein binding | 1.97365365208963 | bayes_pls_golite062009 |
| nucleic acid binding | 1.74252996786746 | bayes_pls_golite062009 |
| DNA binding | 1.73786982174918 | bayes_pls_golite062009 |
| transcription factor activity | 1.0565013251721 | bayes_pls_golite062009 |
| clathrin binding | 0.196939581490181 | bayes_pls_golite062009 |
|
Region A: Residues: [118-460] |
1 11 21 31 41 51
| | | | | |
1 TGLPLFEGSA LEKIEQFLIK ASALHQKNLQ AMLPTPTVPL LLRDIDKLTC LTSERLKNQP 60
61 NDEKLKMKLL VLSQLKQELK REKLTLNALK QVQMQLRQVF SQDQQVLQER MRYHELQQQQ 120
121 QQQQQQQQQQ QQQQQQYHET KDMVGSYTQN SNSAIPLFGN NSDTTNQQNS LSSSLFGNIS 180
181 GVESFQEIEK KKSLNKINNL YASLKAEGLI YTPPKESIVT LYKKLNGHSN YSLDSHEKQL 240
241 MKNLPKIPLL NDILSDCKAY FATVNIDVLN NPSLQLSEQT LLQENPIVQN NLIHLLYRSK 300
301 PNKCSVCGKR FGNSESEKLL QNEHLDWHFR INTRIKGSQN TAN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [461-514] |
1 11 21 31 41 51
| | | | | |
1 TGISNSNLNT TTTRKNIQSR NWYLSDSQWA AFKDDEITST KHKNDYTDPH ANKN
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.342 | d.17.3 | Disulfide bond isomerase, DsbC, N-terminal domain |
|
Region A: Residues: [515-626] |
1 11 21 31 41 51
| | | | | |
1 IDKSALNIHA DENDEGSVDN TLGSDRSNEL EIRGKYVVVP ETSQDMAFKC PICKETVTGV 60
61 YDEESGEWVW KNTIEVNGKY FHSTCYHETS QNSSKSNSGK VGLDDLKKLV TK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.236 | N/A | N/A | c.51.2 | TolB, N-terminal domain |
