| Protein: | EBS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 884 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EBS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..884] | [1..884] |
|
|
4.0E-95 | [10..347] | [8..342] |
|
|
2.0E-72 | [49..386] | [36..338] |
|
|
4.0E-59 | [16..318] | [19..254] |
|
|
1.0E-48 | [51..285] | [32..252] |
|
|
3.0E-37 | [143..294] | [3..138] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MEPSNTQKED LPTAFNGIKS QLNSILKSNQ LFQDYALLNG FLAFVHSKLN AAILTSIESQ 60
61 CGKSFAADLD SFDQSSISSI
|
| Detection Method: |  |
| Confidence: | 7.29 |
| Match: | 1hz4A |
| Description: | Transcription factor MalT domain III |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.76684454218635 | bayes_pls_golite062009 |
| binding | 2.71974493738804 | bayes_pls_golite062009 |
| transcription regulator activity | 1.96129657517284 | bayes_pls_golite062009 |
| protein binding | 1.6279032205159 | bayes_pls_golite062009 |
| nucleic acid binding | 1.62783430593918 | bayes_pls_golite062009 |
| DNA binding | 1.62663906748938 | bayes_pls_golite062009 |
| transcription repressor activity | 1.16294866757073 | bayes_pls_golite062009 |
| transcription factor activity | 0.934706586922936 | bayes_pls_golite062009 |
| hydrolase activity | 0.488980079329603 | bayes_pls_golite062009 |
| transcription factor binding | 0.441518464573089 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.19094857768269 | bayes_pls_golite062009 |
| ligase activity | 0.102007806594868 | bayes_pls_golite062009 |
| signal sequence binding | 0.0231142793406351 | bayes_pls_golite062009 |
|
Region A: Residues: [81-264] |
1 11 21 31 41 51
| | | | | |
1 LDFSWESVHY PIFKWFQMWR NYILFEKENK KQQTKFIDFR KMNSKMLKFF KTVQNFYVNV 60
61 INTVYKKYDI SVLLPKRIIQ DLKLSDIENT TNVGDILAVK TFNSSSPLAH LIPTLFHRCL 120
121 LFLGTAYRYK TLLEEISNKY SISNFKKSLD FFRLASLVLP SAGETYSQAG AIFLQTGNLG 180
181 IAVF
|
| Detection Method: | |
| Confidence: | 7.29 |
| Match: | 1hz4A |
| Description: | Transcription factor MalT domain III |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [265-480] |
1 11 21 31 41 51
| | | | | |
1 NFVKGMMTKM PSPVSIKNFG ALMVDNKSSL NRSLHTTIMN TYLQESKGPR TPAKEILEFY 60
61 FLGLFGSVWS PTSWRDDTKP NQLNNGIKLR HLENALYETM SARYLNNIKT IFHNLIITIG 120
121 GFHLLLKRRS DVSAKTLKDL RSNELDYLNF AFKYIAHILN DIVKESWSEN PEVSEILGMV 180
181 RIINCWIKAN PMVLQYSQSN LEFVNALAYL INDIVK
|
| Detection Method: | |
| Confidence: | 7.29 |
| Match: | 1hz4A |
| Description: | Transcription factor MalT domain III |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [481-884] |
1 11 21 31 41 51
| | | | | |
1 KKPSPSFSIT EHIPKRTYWF EEDLMVKGLS FVNFQLSDFD DYEKILEMDH SLDRLIGNPP 60
61 LCDKLSASSE MLLRLQAVVN ISSQLLQNNN CGVEWSDNKS RYIFNKKIGF KETVKNSMKT 120
121 SKQSNEKAKL QRKNKPSTTN GSISMADLER QMRSSSLDSF SPTMGYSGSS VPMAPDTFNV 180
181 KPSGTITGNK VNVELLKIEL SGQNADGAIT NISPGYSNAA ISSSNSTDES SFDLNNILSS 240
241 MQQKHAEKSF AKSMQGVNEQ IPANDVCHQA QRPMQGGLYS SQQPSSMSSL NSAYQNASMP 300
301 PSASMVSYPY PFLNQQGQGV FPPYNAQNLQ WQSEAYSLKS MNFANPTWLG DQYQTSAPSS 360
361 AYAQAQRQMF QQPMQQDVGK YMQFPFDAQS NTDSMRGNSR NNMF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
