| Protein: | SCC2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1493 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCC2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1493] | [1..1493] |
|
|
0.0 | [277..1385] | [319..1476] |
|
|
0.0 | [243..1382] | [649..1912] |
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6.0E-99 | [423..1406] | [452..1499] |
|
Region A: Residues: [1-354] |
1 11 21 31 41 51
| | | | | |
1 MSYPGKDKNI PGRIIEALED LPLSYLVPKD GLAALVNAPM RVSLPFDKTI FTSADDGRDV 60
61 NINVLGTANS TTSSIKNEAE KERLVFKRPS NFTSSANSVD YVPTNFLEGL SPLAQSVLST 120
121 HKGLNDSINI EKKSEIVSRP EAKHKLESVT SNAGNLSFND NSSNKKTKTS TGVTMTQANL 180
181 AEQYLNDLKN ILDIVGFDQN SAEIGNIEYW LQLPNKKFVL TTNCLTKLQM TIKNITDNPQ 240
241 LSNSIEITWL LRLLDVMVCN IKFSKSSLKM GLDDSMLRYI ALLSTIVLFN IFLLGKNDSN 300
301 LHRESYIMEP VNFLSDLIES LKILTIEYGS LKIEFDTFQE ALELLPKYIR NGPF
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [355-1408] |
1 11 21 31 41 51
| | | | | |
1 LDDNVTAKLV YIFSDLLMNN DIEATTNIQF QSFWDNVKRI SSDILVSLFG SFDQQRGFII 60
61 EELLSHIEKL PTKRIQKKLR KVGNQNIYIT DFTFTLMSML ENINCYSFCN QMKDIAPENI 120
121 DLLKNEYKKQ EEFLFNIVEH INDTILERFF KNPSALRYVI DNFVQDLLLL ISSPQWPVTE 180
181 KILSSLLKRL LSVYSPSMQV SANIETICLQ LIGNIGSTIF DIKCSTRDHE DNNLIKMINY 240
241 PETLPHFFKS FEECIAYNET IKCRRSATRF LWNLRLGTIL ILEEYTKDAK EQIITVDNEL 300
301 KKILEQIKDG GLGPELENRE ADFSTIKLDY FSILHAFELL NLYDPYLKLI LSLLAKDKIK 360
361 LRSTAIKCLS MLASKDKVIL SNPMVKETIH RRLNDSSASV KDAILDLVSI NSSYFEFYQQ 420
421 INNNYNDDSI MVRKHVLRIN EKMYDETNDI VTKVYVIARI LMKIEDEEDN IIDMARLILL 480
481 NRWILKVHEV LDQPEKLKEI SSSVLLVMSR VAIMNEKCSQ LFDLFLNFYL LNKEAHSKEA 540
541 YDKITHVLTI LTDFLVQKIV ELNSDDTNEK NSIVDKQNFL NLLAKFADST VSFLTKDHIT 600
601 ALYPYMVSDE KSDFHYYILQ VFRCTFEKLA NFKQKFLYDL ETTLLSRLPK MNVREIDEAM 660
661 PLIWSVATHR HDTARVAKAC SSCLSHLHPY INKANNEEAA IVVDGKLQRL IYLSTGFARF 720
721 CFPKPSNDKI AFLQEGETLY EHITKCLLVL SKDKITHVIR RVAVKNLTKL CGNHPKLFNS 780
781 RHVLHLLDKE FQSDQLDIKL VILESLYDLF LLEERKSVRN TGVNSTLSSN SILKKKLLKT 840
841 NRVEFANDGV CSALATRFLD NILQLCLLRD LKNSLVAIRL LKLILKFGYT NPSHSIPTVI 900
901 ALFASTSQYI RHVAYELLED LFEKYETLVF SSLSRGVTKA IHYSIHTDEK YYYKHDHFLS 960
961 LLEKLCGTGK KNGPKFFKVL KRIMQSYLDD ITDLTSTNSS VQKSIFVLCT NISNITFVSQ1020
1021 YDLVSLLKTI DLTTDRLKEV IMDEIGDNVS SLSV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1409-1493] |
1 11 21 31 41 51
| | | | | |
1 SEEKLSGIIL IQLSLQDLGT YLLHLYGLRD DVLLLDIVEE SELKNKQLPA KKPDISKFSA 60
61 QLENIEQYSS NGKLLTYFRK HVKDT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.632 | a.39.1 | EF-hand |
| View | Download | 0.688 | a.1.1 | Globin-like |
| View | Download | 0.750 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.713 | d.45.1 | ClpS-like |
| View | Download | 0.578 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.518 | a.64.1 | Saposin |
| View | Download | 0.503 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.499 | a.28.1 | ACP-like |
| View | Download | 0.485 | d.58.49 | YajQ-like |
| View | Download | 0.426 | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.410 | b.9.1 | Neurophysin II |
| View | Download | 0.408 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.408 | d.58.17 | Metal-binding domain |
| View | Download | 0.405 | a.29.2 | Bromodomain |
| View | Download | 0.399 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.396 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.396 | a.4.1 | Homeodomain-like |
| View | Download | 0.395 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.393 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.390 | a.77.1 | DEATH domain |
| View | Download | 0.381 | d.67.2 | Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |
| View | Download | 0.380 | a.3.1 | Cytochrome c |
| View | Download | 0.372 | a.130.1 | Chorismate mutase II |
| View | Download | 0.369 | a.60.13 | Putative methyltransferase TM0872, insert domain |
| View | Download | 0.369 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.364 | a.69.2 | Ypt/Rab-GAP domain of gyp1p |
| View | Download | 0.360 | a.39.1 | EF-hand |
| View | Download | 0.335 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.333 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.333 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.330 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.322 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.317 | d.237.1 | Hypothetical protein YjiA, C-terminal domain |
| View | Download | 0.313 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.312 | c.15.1 | BRCT domain |
| View | Download | 0.311 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.303 | a.29.2 | Bromodomain |
| View | Download | 0.294 | a.118.1 | ARM repeat |
| View | Download | 0.294 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.289 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.289 | a.118.1 | ARM repeat |
| View | Download | 0.272 | c.47.1 | Thioredoxin-like |
| View | Download | 0.271 | c.24.1 | Methylglyoxal synthase-like |
| View | Download | 0.271 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.270 | a.4.1 | Homeodomain-like |
| View | Download | 0.255 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.254 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.249 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.244 | d.203.1 | DsrC, the gamma subunit of dissimilatory sulfite reductase |
| View | Download | 0.243 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.237 | a.3.1 | Cytochrome c |
| View | Download | 0.231 | d.58.5 | GlnB-like |
| View | Download | 0.228 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.226 | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.223 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.220 | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.218 | a.4.1 | Homeodomain-like |
| View | Download | 0.217 | a.21.1 | HMG-box |
| View | Download | 0.213 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.210 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.210 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.209 | a.7.8 | GAT domain |
| View | Download | 0.208 | a.29.2 | Bromodomain |
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Region A: Residues: [381-480] |
1 11 21 31 41 51
| | | | | |
1 NIQFQSFWDN VKRISSDILV SLFGSFDQQR GFIIEELLSH IEKLPTKRIQ KKLRKVGNQN 60
61 IYITDFTFTL MSMLENINCY SFCNQMKDIA PENIDLLKNE
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [481-1309] |
1 11 21 31 41 51
| | | | | |
1 YKKQEEFLFN IVEHINDTIL ERFFKNPSAL RYVIDNFVQD LLLLISSPQW PVTEKILSSL 60
61 LKRLLSVYSP SMQVSANIET ICLQLIGNIG STIFDIKCST RDHEDNNLIK MINYPETLPH 120
121 FFKSFEECIA YNETIKCRRS ATRFLWNLRL GTILILEEYT KDAKEQIITV DNELKKILEQ 180
181 IKDGGLGPEL ENREADFSTI KLDYFSILHA FELLNLYDPY LKLILSLLAK DKIKLRSTAI 240
241 KCLSMLASKD KVILSNPMVK ETIHRRLNDS SASVKDAILD LVSINSSYFE FYQQINNNYN 300
301 DDSIMVRKHV LRINEKMYDE TNDIVTKVYV IARILMKIED EEDNIIDMAR LILLNRWILK 360
361 VHEVLDQPEK LKEISSSVLL VMSRVAIMNE KCSQLFDLFL NFYLLNKEAH SKEAYDKITH 420
421 VLTILTDFLV QKIVELNSDD TNEKNSIVDK QNFLNLLAKF ADSTVSFLTK DHITALYPYM 480
481 VSDEKSDFHY YILQVFRCTF EKLANFKQKF LYDLETTLLS RLPKMNVREI DEAMPLIWSV 540
541 ATHRHDTARV AKACSSCLSH LHPYINKANN EEAAIVVDGK LQRLIYLSTG FARFCFPKPS 600
601 NDKIAFLQEG ETLYEHITKC LLVLSKDKIT HVIRRVAVKN LTKLCGNHPK LFNSRHVLHL 660
661 LDKEFQSDQL DIKLVILESL YDLFLLEERK SVRNTGVNST LSSNSILKKK LLKTNRVEFA 720
721 NDGVCSALAT RFLDNILQLC LLRDLKNSLV AIRLLKLILK FGYTNPSHSI PTVIALFAST 780
781 SQYIRHVAYE LLEDLFEKYE TLVFSSLSRG VTKAIHYSIH TDEKYYYKH
|
| Detection Method: | |
| Confidence: | 3.13 |
| Match: | 2ie3A |
| Description: | No description for 2ie3A was found. |
| Term | Confidence | Notes |
| binding | 2.81296846555705 | bayes_pls_golite062009 |
| protein transporter activity | 2.6734690782599 | bayes_pls_golite062009 |
| protein binding | 1.81870125631028 | bayes_pls_golite062009 |
| nucleic acid binding | 1.78701774446386 | bayes_pls_golite062009 |
| transporter activity | 1.44589191111517 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.19535295481088 | bayes_pls_golite062009 |
| transcription regulator activity | 1.08645493064764 | bayes_pls_golite062009 |
| DNA binding | 0.956143892328242 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 0.824035252349223 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.384349606267362 | bayes_pls_golite062009 |
| transcription factor activity | 0.371244009721798 | bayes_pls_golite062009 |
| RNA binding | 0.369141052569571 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.338017015160581 | bayes_pls_golite062009 |
| signal sequence binding | 0.262155773896291 | bayes_pls_golite062009 |
| nuclear localization sequence binding | 0.19122877456451 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.0946244209704199 | bayes_pls_golite062009 |
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Region A: Residues: [1310-1493] |
1 11 21 31 41 51
| | | | | |
1 DHFLSLLEKL CGTGKKNGPK FFKVLKRIMQ SYLDDITDLT STNSSVQKSI FVLCTNISNI 60
61 TFVSQYDLVS LLKTIDLTTD RLKEVIMDEI GDNVSSLSVS EEKLSGIILI QLSLQDLGTY 120
121 LLHLYGLRDD VLLLDIVEES ELKNKQLPAK KPDISKFSAQ LENIEQYSSN GKLLTYFRKH 180
181 VKDT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
