| Protein: | GDH2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1092 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GDH2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [25..1087] | [44..1025] |
|
|
0.0 | [1..1092] | [1..1092] |
|
|
0.0 | [24..1086] | [23..1029] |
|
|
0.0 | [29..1081] | [92..1096] |
|
|
0.0 | [231..1082] | [161..982] |
|
|
0.0 | [405..1087] | [1..670] |
|
|
0.0 | [40..660] | [34..677] |
|
|
0.0 | [352..1068] | [548..1303] |
|
Region A: Residues: [1-377] |
1 11 21 31 41 51
| | | | | |
1 MLFDNKNRGA LNSLNTPDIA SLSISSMSDY HVFDFPGKDL QREEVIDLLD QQGFIPDDLI 60
61 EQEVDWFYNS LGIDDLFFSR ESPQLISNII HSLYASKLDF FAKSKFNGIQ PRLFSIKNKI 120
121 ITNDNHAIFM ESNTGVSISD SQQKNFKFAS DAVGNDTLEH GKDTIKKNRI EMDDSCPPYE 180
181 LDSEIDDLFL DNKSQKNCRL VSFWAPESEL KLTFVYESVY PNDDPAGVDI SSQDLLKGDI 240
241 ESISDKTMYK VSSNENKKLY GLLLKLVKER EGPVIKTTRS VENKDEIRLL VAYKRFTTKR 300
301 YYSALNSLFH YYKLKPSKFY LESFNVKDDD IIIFSVYLNE NQQLEDVLLH DVEAALKQVE 360
361 REASLLYAIP NNSFHEV
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [378-471] |
1 11 21 31 41 51
| | | | | |
1 YQRRQFSPKE AIYAHIGAIF INHFVNRLGS DYQNLLSQIT IKRNDTTLLE IVENLKRKLR 60
61 NETLTQQTII NIMSKHYTII SKLYKNFAQI HYYH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [472-719] |
1 11 21 31 41 51
| | | | | |
1 NSTKDMEKTL SFQRLEKVEP FKNDQEFEAY LNKFIPNDSP DLLILKTLNI FNKSILKTNF 60
61 FITRKVAISF RLDPSLVMTK FEYPETPYGI FFVVGNTFKG FHIRFRDIAR GGIRIVCSRN 120
121 QDIYDLNSKN VIDENYQLAS TQQRKNKDIP EGGSKGVILL NPGLVEHDQT FVAFSQYVDA 180
181 MIDILINDPL KENYVNLLPK EEILFFGPDE GTAGFVDWAT NHARVRNCPW WKSFLTGKSP 240
241 SLGGIPHD
|
|
Region B: Residues: [921-940] |
1 11 21 31 41 51
| | | | | |
1 GVTSSSMEVL ASLALNDNDF
|
|
Region C: Residues: [971-1015] |
1 11 21 31 41 51
| | | | | |
1 AELEFGQLWN LNQLNGTHIS EISNQLSFTI NKLNDDLVAS QELWL
|
| Detection Method: | |
| Confidence: | 117.0 |
| Match: | 1euzA_ |
| Description: | Glutamate dehydrogenase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [720-920] |
1 11 21 31 41 51
| | | | | |
1 EYGMTSLGVR AYVNKIYETL NLTNSTVYKF QTGGPDGDLG SNEILLSSPN ECYLAILDGS 60
61 GVLCDPKGLD KDELCRLAHE RKMISDFDTS KLSNNGFFVS VDAMDIMLPN GTIVANGTTF 120
121 RNTFHTQIFK FVDHVDIFVP CGGRPNSITL NNLHYFVDEK TGKCKIPYIV EGANLFITQP 180
181 AKNALEEHGC ILFKDASANK G
|
|
Region B: Residues: [941-970] |
1 11 21 31 41 51
| | | | | |
1 VHKFIGDVSG ERSALYKSYV VEVQSRIQKN
|
| Detection Method: | |
| Confidence: | 117.0 |
| Match: | 1euzA_ |
| Description: | Glutamate dehydrogenase |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor | 4.08697502437308 | bayes_pls_golite062009 |
| oxidoreductase activity | 3.54983447672782 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on CH-OH group of donors | 2.66605122152932 | bayes_pls_golite062009 |
| malate dehydrogenase activity | 2.43636049081724 | bayes_pls_golite062009 |
| glutamate dehydrogenase (NADP+) activity | 2.29316799437014 | bayes_pls_golite062009 |
| catalytic activity | 2.0643953589843 | bayes_pls_golite062009 |
| oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 1.54527841865655 | bayes_pls_golite062009 |
| malic enzyme activity | 1.39067036188188 | bayes_pls_golite062009 |
| glutamate dehydrogenase [NAD(P)+] activity | 0.994926158034199 | bayes_pls_golite062009 |
|
Region A: Residues: [1016-1092] |
1 11 21 31 41 51
| | | | | |
1 NDLKLRNYLL LDKIIPKILI DVAGPQSVLE NIPESYLKVL LSSYLSSTFV YQNGIDVNIG 60
61 KFLEFIGGLK REAEASA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
