| Protein: | VAM6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1049 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAM6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1049] | [1..1049] |
|
|
5.0E-84 | [483..1019] | [321..880] |
|
|
7.0E-84 | [483..1019] | [321..880] |
|
|
3.0E-76 | [423..903] | [339..823] |
|
|
1.0E-73 | [358..1048] | [307..917] |
|
Region A: Residues: [1-420] |
1 11 21 31 41 51
| | | | | |
1 MLRAQKLHSL KSSDITAILP TEQSQKLVLA KKNGDVEVYS RDGNTLKLFQ VYPDLLQNAK 60
61 NDPLPPVIEN FYFANELSTI FAQCKETLIL LSTTNLHEYD RIIDRRGINH CWLFERSHKN 120
121 KEEKNTYLIY STINTAKMRV LIWEGRTYKN MMEASLSYRK ETIRSIYPGE TGITLATDLG 180
181 IYHWPYNKPS LIRIEKTVKN KFPKDMISAL TELKEQAEKV IEKKPKKNSH FDAQSFSSMD 240
241 RMSRKSSMSS LWYRTIRNER GNKIRYTFEL DGNDATPMII DGATKKIFKV ELMHNNEEPF 300
301 LIATDHATFS ESNSEFDHMQ YLSSNLLMLY NSSTIKFVDY ENGFTFLQQK IPEGIKWVKN 360
361 LSGTYFLVWT SNDEVQLFSY HVDDGSEDDD QESICGDIND PDFYQLWRKV LFYKFFIDSP 420
421
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [421-544] |
1 11 21 31 41 51
| | | | | |
1 HSKELCVSDN PEESLDICAM KLRDLTVMWC LRIFDKFQNY MVQLERSRNS RMIRSKCEEM 60
61 IIKSIFDLFI KFWAPPQLVI LKVFPSAISS LVLEITGQEH HCLLKEAEEV KETYDIPPHL 120
121 LNRW
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.805 | 0.005 | vacuolar membrane | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
|
Region A: Residues: [545-859] |
1 11 21 31 41 51
| | | | | |
1 CLPYLTDTRR HLQNLLSKEN DDESRITWCY RDREIKQSFD FFLISNHDDV DLNTMLTLID 60
61 TVLFKCYLYY NPPMVGPFIR VENHCDSHVI VTELKIRHMF KDLIDFYYKR GNHEEALKFL 120
121 TDLVDELEND NTDQKQRQKI DHGVKILVIY YLKKLSNPQL DVIFTYTDWL LNRHNDSIKE 180
181 ILSSIFFYDS QACSSRDHLK VYGYIKKFDK LLAIQYLEFA ISTFRLEGNK LHTVLIKLYL 240
241 ENLDIPSTRI KLKSLLETTS VYEPRTILKL LNDAIESGSD QLPTNQLNFV KYLKIFPLSK 300
301 LENHKEAVHI LLDEI
|
| Detection Method: | |
| Confidence: | 41.045757 |
| Match: | 1b89A_ |
| Description: | Clathrin heavy chain proximal leg segment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [860-974] |
1 11 21 31 41 51
| | | | | |
1 DDYKAATSYC NDVYQSDSTK GEELLLYLYS KLVSIYDSNR NSKLILNFLQ DHGSKLNSAE 60
61 IYKNLPQDIS LYDIGRVVSQ LLKKHTSKMD ETRLEKALLQ VELVATTYKL NERMS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.853 | 0.020 | vacuolar membrane | a.24.4 | Hemerythrin |
|
Region A: Residues: [975-1049] |
1 11 21 31 41 51
| | | | | |
1 SYGVLSDSHK CPICKKVISN FGTDSISWFT REGRNIITHY NCGKVLQERF NAKNEKSSRI 60
61 KQKTLGEVIN ELNNK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
