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Protein Overview: gi|15221363

General Information:
Name(s) found: gi|15221363 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|15221363|ref|NP_172709.1| Pep3/Vps18/deep orange family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 994 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQGRQVFSV DLLERYATKN RGMITCMAAG NDVIVLGTSK GWIIRYDFGV GSSNDIDLAV  60
   61 GRTGEQSIHK VFVDPGGSHC IATVTGVGGA ETFYTHAKWL KPRVLSRLKG LLVNAVAWNR 120
  121 QQITEVSTKE IILGTQDGQL FEMAVDEKDK REKYIKFLFE LEELPEAFKA LQMETANISS 180
  181 GMRYYVMAVT PTRLYSFTGI GTLESVFASY KERAVHFMEL PGEIPNRQVL DYLRLILRIK 240
  241 EITKCNSTLL TWTGIYHGGL NFGAQHSYPN GDENFVENKA LLDYSKLSDG TEAVKPGSMA 300
  301 LSEYHFLLLI GNKVKVVNRI SEQIIEELQF DITSDSVSRG IIGLCSDASA NVFYAYDQNS 360
  361 IFQVSVIDEG RDMWKVYLDL KVYAAALANC RDPLQRDQVY LVQAESAFTD KEYLRAASFY 420
  421 AKINYVISFE EVTLKFISIN EPEALRTFLL HKLDNLSKDD KCQITMISTW ATELYLDKIN 480
  481 RLLLEDDTAI ENRDSEYHSV IQEFRAFMSD CKDELDEATT VKILESYGRV EELVYFANLK 540
  541 EQYEIVVLHY IQQGEAKKAL EVLQKSSVSV ELQYQFAPEL IMLDAYETVE SWMANKNLNP 600
  601 RRLITAMMRY SSGPHAKNET HEVIKYLEFC VHRLHNEDPG IHSLLLSLYA KQEDDGALLR 660
  661 FLQCKFGKGR ENGPEFFYDP KYALRLCLKE RRTRACVHIY SMMSMHEEAV ALALQIDPEL 720
  721 AMAEADKVED DEDLRKKLWL MVAKHVVKQE KGAKRENIRK AIAFLKETDG LLKIEDILPF 780
  781 FPDFALIDDF KEAICSSLED YNKQIEQLKE EMNDATRGAD NIRNDISALT QRYAVIDRDE 840
  841 ECGVCKRKIL MMSGDFRMAQ GYSSAGPLAP FYVFPCGHSF HAQCLITHVT SCAHEEQAEH 900
  901 ILDLQKQLTL LGSETRRDIN GNRSDEPITS TTTADKLRSE LDDAIASECP FCGELMINEI 960
  961 TLPFIKPEDS QYSTSWDLRS ETNLANQRTI SLPV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..129] deduced N/A No confident structure predictions are available.
    2 View Details [130..831] PSI-BLAST 80.09691 Clathrin D6 Coat
    3 View Details [832..994] FFAS03 1.56 Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  2.13191655110108 bayes_pls_golite062009
  • protein binding
    		•  1.50887080730571 bayes_pls_golite062009
  • hydrolase activity
    		•  0.655294192941994 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.255545689478916 bayes_pls_golite062009
  • catalytic activity
    		•  0.168711389690753 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.156675195132937 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle