| Protein: | PDR3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 976 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDR3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [5..969] | [36..1058] |
|
|
2.0E-59 | [296..517] | [231..431] |
|
|
1.0E-42 | [417..579] | [321..501] |
|
|
1.0E-42 | [2..324] | [27..386] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MKVKKSTRSK VSTACVNCRK RKIKCTGKYP CTNCISYDCT CVFLKKHLPQ KEDSSQSLPT 60
61 TAVAPPSSHA NVEASADVQH LDTAIKLDNQ YYFKLMNDLI QTP
|
| Detection Method: |  |
| Confidence: | 46.144602 |
| Match: | 1ajyA_ |
| Description: | PUT3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.98081393153291 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| transcription activator activity | 2.24483536326713 | bayes_pls_golite062009 |
|
Region A: Residues: [104-404] |
1 11 21 31 41 51
| | | | | |
1 VSPSATHAPD TSNNPTNDNN ILFKDDSKYQ NQLVTYQNIL TNLYALPPCD DTQLLIDKTK 60
61 SQLNNLINSW NPEINYPKLS SFSPRPQRSI ETYLLTNKYR NKIHMTRFSF WTDQMVKSQS 120
121 PDSFLATTPL VDEVFGLFSP IQAFSLRGIG YLIKKNIENT GSSMLIDTKE TIYLILRLFD 180
181 LCYEHLIQGC ISISNPLENY LQKIKQTPTT TASASLPTSP APLSNDLVIS VIHQLPQPFI 240
241 QSITGFTTTQ LIENLHDSFS MFRIVTQMYA QHRKRFAEFL NQAFSLPHQE KSVLFSSFCS 300
301 S
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [405-538] |
1 11 21 31 41 51
| | | | | |
1 EYLLSTLCYA YYNVTLYHML DINTLDYLEI LVSLLEIQNE IDERFGFEKM LEVAVTCSTK 60
61 MGLSRWEYYV GIDENTAERR RKIWWKIYSL EKRFLTDLGD LSLINEHQMN CLLPKDFRDM 120
121 GFINHKEFLT KIGT
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.396 | 0.375 | regulation of transcription from RNA polymerase II promoter | a.74.1 | Cyclin-like |
| View | Download | 0.571 | 0.047 | transcription activator activity | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.330 | 0.006 | DNA binding | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.315 | 0.001 | transcription activator activity | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.313 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.304 | N/A | N/A | d.110.4 | SNARE-like |
| View | Download | 0.301 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.299 | N/A | N/A | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.267 | N/A | N/A | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.266 | N/A | N/A | c.116.1 | alpha/beta knot |
| View | Download | 0.256 | N/A | N/A | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.243 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.241 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.237 | N/A | N/A | a.185.1 | Gametocyte protein Pfg27 |
| View | Download | 0.236 | N/A | N/A | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.231 | N/A | N/A | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.226 | N/A | N/A | d.110.2 | GAF domain-like |
| View | Download | 0.224 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.212 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.210 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.202 | N/A | N/A | d.110.4 | SNARE-like |
|
Region A: Residues: [539-976] |
1 11 21 31 41 51
| | | | | |
1 SSLSPSSPKL KNLSLSRLIE YGELAIAQIV GDFFSETLYN EKFTSLEVSV KPTIIRQKLL 60
61 EKVFEDIESF RLKLAKIKLH TSRVFQVAHC KYPEYPKNDL IEAAKFVSYH KNTWFSILGA 120
121 VNNLIARLSE DPEVITEQSM KYANEMFQEW REINQFLIQV DTDFIVWACL DFYELIFFVM 180
181 ASKFYVEDPH ITLEDVINTL KVFKRITNII SFFNNNLDEK DYDCQTFREF SRSSSLVAIS 240
241 IRIIFLKYCY AEQIDRAEFI ERLKEVEPGL SDLLREFFDT RSFIYRYMLK SVEKSGFHLI 300
301 IRKMLESDYK FLYRDKLATG NIPDQGNSSQ ISQLYDSTAP SYNNASASAA NSPLKLSSLL 360
361 NSGEESYTQD ASENVPCNLR HQDRSLQQTK RQHSAPSQIS ANENNIYNLG TLEEFVSSGD 420
421 LTDLYHTLWN DNTSYPFL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.571 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.396 | a.74.1 | Cyclin-like |
| View | Download | 0.330 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.315 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.313 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
|
Region A: Residues: [525-754] |
1 11 21 31 41 51
| | | | | |
1 GFINHKEFLT KIGTSSLSPS SPKLKNLSLS RLIEYGELAI AQIVGDFFSE TLYNEKFTSL 60
61 EVSVKPTIIR QKLLEKVFED IESFRLKLAK IKLHTSRVFQ VAHCKYPEYP KNDLIEAAKF 120
121 VSYHKNTWFS ILGAVNNLIA RLSEDPEVIT EQSMKYANEM FQEWREINQF LIQVDTDFIV 180
181 WACLDFYELI FFVMASKFYV EDPHITLEDV INTLKVFKRI TNIISFFNNN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [755-976] |
1 11 21 31 41 51
| | | | | |
1 LDEKDYDCQT FREFSRSSSL VAISIRIIFL KYCYAEQIDR AEFIERLKEV EPGLSDLLRE 60
61 FFDTRSFIYR YMLKSVEKSG FHLIIRKMLE SDYKFLYRDK LATGNIPDQG NSSQISQLYD 120
121 STAPSYNNAS ASAANSPLKL SSLLNSGEES YTQDASENVP CNLRHQDRSL QQTKRQHSAP 180
181 SQISANENNI YNLGTLEEFV SSGDLTDLYH TLWNDNTSYP FL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
