| Protein: | YCUA_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 525 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCUA_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
186.0 | [0..12] | [522..42] |
|
|
171.0 | [0..14] | [521..18] |
|
|
166.0 | [0..2] | [516..15] |
|
|
163.0 | [0..1] | [506..8] |
|
|
161.0 | [0..8] | [521..10] |
|
|
160.0 | [0..11] | [522..7] |
|
|
159.0 | [0..16] | [522..6] |
|
|
156.0 | [0..2] | [521..17] |
|
Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MTSTSHFVAS TVKKPRSRYG CLICRSMRKK CDEVHPQCGR CLKAGKQCIW KQPGTERKNK 60
61 TKWRKAMQNN SIPIQDLADD FELDFPDTLD LTNPDALPVL GESIVNPISL PVDVASPFLP 120
121 SECYPSKVEL PYFPLL
|
| Detection Method: |  |
| Confidence: | 8.39794 |
| Match: | 1pyiA |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.03201524223606 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.86200506906385 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [137-200] |
1 11 21 31 41 51
| | | | | |
1 SKPNTLLSLL NDEEISCCEY YCYSVAPITT ILPGQPNFLP QLLLPMALHE ESVLYSLVAS 60
61 GYRL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [201-370] |
1 11 21 31 41 51
| | | | | |
1 KYGNDNSLAL QKSKVFVNRA LLTLPERRSL NLSKSEFVVS LACYILLVYT EIAFADTTEW 60
61 ATYFLNAYNM INKMGGFKIL KECSSEGKLL AECFAYFDIL ASQSNLNGTY YSISDYTDVY 120
121 GVDELQLFES LENCIKPLVL IIGDIINLLV ESRRAGFDDL QHTLNIYEKS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [371-525] |
1 11 21 31 41 51
| | | | | |
1 QTIEGKIWSC VPQYEDMKSN KLDSEKSEPL QLFKLYKTTT EMYLRQVISR MPPVSLEMQV 60
61 LLHKQTQLID LLLESSLRNS LSFPMLIAGL NAATDLQRTN FKNRVNCLCQ NYTIGSLKKV 120
121 WIVVQEIWKM NQNGNICIDW YEVVQKFGWR LNTGV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
