YRC Public Data Repository - Protein Structure Prediction

Protein:	YCUA_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	525 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCUA_SCHPO.

Description	E-value	Query Range	Subject Range
orf19.6038, orf1... - UGA32 CGDID:CAL0005105 Assembly 19, Contig19-10237 (83728, 85479) CDS, translated using codon table ... gi\|46440797, gi\|... - gi\|68474003\|ref\|XP_718898.1\| potential fungal zinc cluster transcription factor [Candida albicans SC...	186.0	[0..12]	[522..42]
gi\|49648938, gi\|... - gi\|50551193\|ref\|XP_503070.1\| YALI0D20394p [Yarrowia lipolytica], gi\|49648938\|emb\|CAG81262.1\| unnamed... gi\|49648938 - gi\|49648938\|emb\|CAG81262.1\| YALI0D20394p [Yarrowia lipolytica]	171.0	[0..14]	[521..18]
gi\|238503037, gi... - gi\|238503037\|ref\|XP_002382752.1\| C6 transcription factor, putative [Aspergillus flavus NRRL3357], gi... gi\|83771379 - gi\|83771379\|dbj\|BAE61511.1\| unnamed protein product [Aspergillus oryzae] gi\|169776355 - gi\|169776355\|ref\|XP_001822644.1\| hypothetical protein [Aspergillus oryzae RIB40]	166.0	[0..2]	[516..15]
gi\|157070675, gi... - gi\|164424820\|ref\|XP_963502.2\| hypothetical protein NCU05414 [Neurospora crassa OR74A], gi\|157070675\|... gi\|16944523 - gi\|16944523\|emb\|CAD11325.1\| hypothetical protein [Neurospora crassa]	163.0	[0..1]	[506..8]
gi\|90300540, gi\|... - gi\|90300540\|gb\|EAS30171.1\| hypothetical protein CIMG_08917 [Coccidioides immitis RS], gi\|119180594\|r...	161.0	[0..8]	[521..10]
UGA3_YEAST - Transcriptional activator protein UGA3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=U... UGA3 - Transcriptional activator necessary for gamma-aminobutyrate (GABA)-dependent induction of GABA genes...	160.0	[0..11]	[522..7]
gi\|42554487, gi\|... - gi\|46130834\|ref\|XP_389148.1\| hypothetical protein FG08972.1 [Gibberella zeae PH-1], gi\|42554487\|gb\|E...	159.0	[0..16]	[522..6]
gi\|115395052, gi... - gi\|115395052\|ref\|XP_001213475.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	156.0	[0..2]	[521..17]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSTSHFVAS TVKKPRSRYG CLICRSMRKK CDEVHPQCGR CLKAGKQCIW KQPGTERKNK  60
   61 TKWRKAMQNN SIPIQDLADD FELDFPDTLD LTNPDALPVL GESIVNPISL PVDVASPFLP 120
  121 SECYPSKVEL PYFPLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.39794
Match:	1pyiA
Description:	PPR1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	4.56444258780502	bayes_pls_golite062009
DNA binding	4.26146437716972	bayes_pls_golite062009
nucleic acid binding	4.17369933547911	bayes_pls_golite062009
transcription factor activity	3.049435548132	bayes_pls_golite062009
binding	2.91929847152301	bayes_pls_golite062009
RNA polymerase II transcription factor activity	2.03201524223606	bayes_pls_golite062009
sequence-specific DNA binding	1.87955444697212	bayes_pls_golite062009
specific RNA polymerase II transcription factor activity	1.86200506906385	bayes_pls_golite062009
transcription activator activity	0.915626626047549	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [137-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKPNTLLSLL NDEEISCCEY YCYSVAPITT ILPGQPNFLP QLLLPMALHE ESVLYSLVAS  60
   61 GYRL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [201-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYGNDNSLAL QKSKVFVNRA LLTLPERRSL NLSKSEFVVS LACYILLVYT EIAFADTTEW  60
   61 ATYFLNAYNM INKMGGFKIL KECSSEGKLL AECFAYFDIL ASQSNLNGTY YSISDYTDVY 120
  121 GVDELQLFES LENCIKPLVL IIGDIINLLV ESRRAGFDDL QHTLNIYEKS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [371-525]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTIEGKIWSC VPQYEDMKSN KLDSEKSEPL QLFKLYKTTT EMYLRQVISR MPPVSLEMQV  60
   61 LLHKQTQLID LLLESSLRNS LSFPMLIAGL NAATDLQRTN FKNRVNCLCQ NYTIGSLKKV 120
  121 WIVVQEIWKM NQNGNICIDW YEVVQKFGWR LNTGV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: