| Protein: | hif-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 665 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hif-1.
| Description | E-value | Query Range |
Subject Range |
|
|
301.0 | [0..2] | [654..5] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MEDNRKRNME RRRETSRHAA RDRRSKESDI FDDLKMCVPI VEEGTVTHLD RIALLRVAAT 60
61 ICRLRKTAGN VLENN
|
| Detection Method: |  |
| Confidence: | 3.12 |
| Match: | 1r05A |
| Description: | Solution Structure of Max B-HLH-LZ |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.08855036296174 | bayes_pls_golite062009 |
| DNA binding | 4.87243318281876 | bayes_pls_golite062009 |
| nucleic acid binding | 4.77537175825177 | bayes_pls_golite062009 |
| transcription factor activity | 4.43134840465732 | bayes_pls_golite062009 |
| binding | 3.63719401349018 | bayes_pls_golite062009 |
| transcription factor binding | 2.33137487648005 | bayes_pls_golite062009 |
| transcription activator activity | 2.29259809049377 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.21218632195974 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.06903182404145 | bayes_pls_golite062009 |
| protein binding | 1.48748521104247 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.30186253699056 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 1.05281795983217 | bayes_pls_golite062009 |
| transcription repressor activity | 0.828519845330998 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.560586077390024 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.172100901723138 | bayes_pls_golite062009 |
|
Region A: Residues: [76-497] |
1 11 21 31 41 51
| | | | | |
1 LDNEITNEVW TEDTIAECLD GFVMIVDSDS SILYVTESVA MYLGLTQTDL TGRALRDFLH 60
61 PSDYDEFDKQ SKMLHKPRGE DTDTTGINMV LRMKTVISPR GRCLNLKSAL YKSVSFLVHS 120
121 KVSTGGHVSF MQGITIPAGQ GTTNANASAM TKYTESPMGA FTTRHTCDMR ITFVSDKFNY 180
181 ILKSELKTLM GTSFYELVHP ADMMIVSKSM KELFAKGHIR TPYYRLIAAN DTLAWIQTEA 240
241 TTITHTTKGQ KGQYVICVHY VLGIQGAEES LVVCTDSMPA GMQVDIKKEV DDTRDYIGRQ 300
301 PEIVECVDFT PLIEPEDPFD TVIEPVVGGE EPVKQADMGI YSVTDEYEQR VYGQISAGND 360
361 IEDCDMDSDT ESIEDSGLAP EFDVDLAPIY NEKMEVDGED EDGGEEEHVR TATMTFCNGF 420
421 FA
|
| Detection Method: | |
| Confidence: | 37.522879 |
| Match: | 1wa9A |
| Description: | Crystal Structure of the PAS repeat region of the Drosophila clock protein PERIOD |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [498-665] |
1 11 21 31 41 51
| | | | | |
1 TSQALRRRHA TGQRTASGQP NRRISVPLWP RRTSWIRHLV PPDRRHHTDE EHKVREVEQL 60
61 DRLPRQHRPH CHTVPTTRHL QRASHNVDLT VPRVSNLDKS CTETLDLWDV AAIRPIRHDA 120
121 FPPFHHQILS MCRPLEASTQ SSEAMMCSPL CLLPILSPLP KGSIRRQH
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 2r6oA |
| Description: | No description for 2r6oA was found. |
