| Protein: | nhr-12 |
| Organism: | Caenorhabditis elegans |
| Length: | 456 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-12.
| Description | E-value | Query Range |
Subject Range |
|
|
300.0 | [0..3] | [453..20] |
|
Region A: Residues: [1-102] |
1 11 21 31 41 51
| | | | | |
1 MEQIPQEQKT EPFLASFTTT EKLGTETPTT SITPNTQFRG RYEKPNCAVC NEVGDGLHFG 60
61 AEACRACTAF FRRSVALSKK YECRAGRNCE VSSNIRCMCR SC
|
| Detection Method: |  |
| Confidence: | 22.09691 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| transcription regulator activity | 4.00967542385368 | bayes_pls_golite062009 |
| DNA binding | 3.60745514727532 | bayes_pls_golite062009 |
| nucleic acid binding | 3.47256374293954 | bayes_pls_golite062009 |
| binding | 2.96409924710655 | bayes_pls_golite062009 |
| transcription activator activity | 2.9532663930699 | bayes_pls_golite062009 |
| transcription factor activity | 2.90769972671972 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.72967350701574 | bayes_pls_golite062009 |
| protein binding | 2.44501340584871 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.40923942043513 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.49515149729803 | bayes_pls_golite062009 |
| transcription factor binding | 1.38523780690867 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.26452462867497 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.68943696300126 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.58115018700114 | bayes_pls_golite062009 |
| transcription repressor activity | 0.256420113528322 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
|
Region A: Residues: [103-456] |
1 11 21 31 41 51
| | | | | |
1 RYDKCIEVGM NPECVQNRRE NDTPKADLQF DTSKTEIRRP IPNFNIVPQA SAVPSTSNFM 60
61 DFSIFKDTPI SNFSAFSPAS LPGLSSSPSL ETMPLLERMR INYDKMENAR NVIHRREGEN 120
121 IFQQKVPRAI TFREATEVTT KEVSLVADWI EWCFDDFGLL PVDQKTILFQ NFFVFFCMLE 180
181 RAFMTVKSGR DGIVVMASKD YIDYDNLEGF FKECNSGTGG TPAEIAKLCR LIRPSFELQK 240
241 RSLINLMRLE NVDSYEFFAL CVMLFWDFGL EGQSDECNEV GRRVKHRVTR EMTFYLRNVK 300
301 KHEEPLYRMA SVVSILPSLQ RAVRRFQEDI EMANIFNIYA LPENFVNIIN GKFN
|
| Detection Method: | |
| Confidence: | 33.0 |
| Match: | 1z5xE |
| Description: | hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A |
Matching Structure (courtesy of the PDB): |
|
