| Protein: | nas-28 |
| Organism: | Caenorhabditis elegans |
| Length: | 497 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nas-28.
| Description | E-value | Query Range |
Subject Range |
|
|
314.0 | [0..40] | [483..13] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MFFPVVFFIP FVLGAPTQKA LEKILVDNNP DSVTNREKIR GIIDKAFENR VPRVQGRQGV 60
61 APPVTFAALN YGPKNN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [77-222] |
1 11 21 31 41 51
| | | | | |
1 QTKKFEELNQ DINEYTFESD IMLNEKQAKH IATAIENGNY RSKRQAIVDT TNFWSVSVPI 60
61 FYQFDTKLSA TNIANVRKAI QFWNDNSCLS FKEDNNAKNR LFLSSAGGCW SYVGKQVDMP 120
121 YQMVSVGPNC DTFGTATHEL MHAIGF
|
| Detection Method: | |
| Confidence: | 36.045757 |
| Match: | 1astA |
| Description: | STRUCTURE OF ASTACIN AND IMPLICATIONS FOR ACTIVATION OF ASTACINS AND ZINC-LIGATION OF COLLAGENASES |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [223-497] |
1 11 21 31 41 51
| | | | | |
1 WHQQSRADRD NYVYVDFSNI IPSQAYNFQK MAVDQAQLLN LPYDYGSVMQ YYPYAFAVDS 60
61 SKYTILAKEN GFQNSMGQRE APAFSDIIGV NKLYNCTSQC KIQMKCSNCG ITDSRNCNQC 120
121 KCPRYFTGAS CDSLPSGTAP NCNGAVLQAT SSWETFDAKA GDPSSFSSST DNSTNCYWHI 180
181 KAPEGQQIEF KMTKTPLAAI CMQECPWQSI EVNLGKFDLF GMITCCDTIL NQVFTSELNM 240
241 IALRGIIRYN QLTFSIQYRA VPSSKPASTN ACLNQ
|
| Detection Method: | |
| Confidence: | 31.0 |
| Match: | 1nt0A |
| Description: | Mannose-binding protein associated serine protease 2, MASP2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 2.03786631670095 | bayes_pls_golite062009 |
| receptor binding | 1.94948331803509 | bayes_pls_golite062009 |
| receptor activity | 1.17703206127603 | bayes_pls_golite062009 |
| hydrolase activity | 1.12447587972667 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 1.10435298721188 | bayes_pls_golite062009 |
| endopeptidase activity | 1.03668892056053 | bayes_pls_golite062009 |
| ErbB-3 class receptor binding | 1.02450424977847 | bayes_pls_golite062009 |
| ErbB-2 class receptor binding | 0.728290475143461 | bayes_pls_golite062009 |
| binding | 0.708339313156457 | bayes_pls_golite062009 |
| metallopeptidase activity | 0.623476257655953 | bayes_pls_golite062009 |
| epidermal growth factor receptor binding | 0.58090527719405 | bayes_pls_golite062009 |
| metalloendopeptidase activity | 0.508669171144608 | bayes_pls_golite062009 |
| protein binding | 0.475826109910145 | bayes_pls_golite062009 |
| transcription factor binding | 0.30492109086541 | bayes_pls_golite062009 |
| signal transducer activity | 0.266830350139867 | bayes_pls_golite062009 |
| molecular transducer activity | 0.266830350139867 | bayes_pls_golite062009 |
| growth factor activity | 0.190406928940325 | bayes_pls_golite062009 |
| catalytic activity | 0.075748351866431 | bayes_pls_golite062009 |
