| Protein: | clp-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 737 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clp-1.
| Description | E-value | Query Range |
Subject Range |
|
|
611.0 | [0..245] | [737..30] |
|
Region A: Residues: [1-219] |
1 11 21 31 41 51
| | | | | |
1 MADDEEEIIQ KVEVKPDEFN GLIGSIAGNL IRDKVGGAGG DILGGLASNF FGGGGGGGGG 60
61 GGGGGFGGGN GGFGGGGGGN YGGGGGNQGG GGGGGFNFND IGGLINSMGG GGGGGQRQGG 120
121 GGGGFGDILG GIGSLIGGGG GGQYNGGGGN VNPNNLNGGM VNVIGNLIGE AAHRFLGVDP 180
181 GTGRIIGAVA GNVIMGLGGK DNSLGNIGKV ILDNIISGK
|
| Detection Method: |  |
| Confidence: | 22.522879 |
| Match: | 1h71P |
| Description: | Metalloprotease |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [220-737] |
1 11 21 31 41 51
| | | | | |
1 FRRDVDPFVR PGPDPDRGGG GSGPSPISPR PTTEPQDFYE LRDQCLESKR LFEDPQFLAN 60
61 DSSLFFSKRP PKRVEWLRPG EITREPQLIT EGHSRFDVIQ GELGDCWLLA AAANLTLKDE 120
121 LFYRVVPPDQ SFTENYAGIF HFQFWQYGKW VDVVIDDRLP TSNGELLYMH SASNNEFWSA 180
181 LLEKAYAKLF GSYEALKGGT TSEALEDMTG GLTEFIDLKN PPRNLMQMMM RGFEMGSLFG 240
241 CSIEADPNVW EAKMSNGLVK GHAYSITGCR IVDGPNGQTC ILRIRNPWGN EQEWNGPWSD 300
301 NSREWRSVPD SVKQDMGLKF DHDGEFWMSF DDFMRNFEKM EICNLGPDVM DEVYQMTGVK 360
361 AAGMVWAANT HDGAWVRNQT AGGCRNYINT FANNPQFRVQ LTDSDPDDDD ELCTVIFAVL 420
421 QKYRRNLKQD GLDNVPIGFA VYDMNNAGNN RGRLSKQFFA ANKSAMRSAA FINLREMTGR 480
481 FRVPPGNYVV VPSTFEPNEE AEFMLRVYTN GFIESEEL
|
| Detection Method: | |
| Confidence: | 172.0 |
| Match: | 1kfuL |
| Description: | Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 3.19059336788201 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 3.05412701733177 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 2.93596559605971 | bayes_pls_golite062009 |
| endopeptidase activity | 2.91734319991078 | bayes_pls_golite062009 |
| hydrolase activity | 2.43328552376748 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| protein binding | 1.92445772322782 | bayes_pls_golite062009 |
| binding | 1.92046698500094 | bayes_pls_golite062009 |
| transporter activity | 1.21845572420504 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.19670958990587 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.07520173658976 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.00091316610003 | bayes_pls_golite062009 |
| signal transducer activity | 0.9347662946007 | bayes_pls_golite062009 |
| molecular transducer activity | 0.9347662946007 | bayes_pls_golite062009 |
| calcium ion binding | 0.687204894708051 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.495368836247989 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.484449686814032 | bayes_pls_golite062009 |
| transcription regulator activity | 0.354062437867002 | bayes_pls_golite062009 |
| nucleic acid binding | 0.313326619937245 | bayes_pls_golite062009 |
| DNA binding | 0.306964954191276 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.246369226539662 | bayes_pls_golite062009 |
| calcium-dependent cysteine-type endopeptidase activity | 0.196538841514154 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.193338880082314 | bayes_pls_golite062009 |
| tubulin binding | 0.11107511867058 | bayes_pls_golite062009 |
