| Protein: | clp-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 780 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clp-1.
| Description | E-value | Query Range |
Subject Range |
|
|
589.0 | [0..312] | [780..56] |
|
Region A: Residues: [1-254] |
1 11 21 31 41 51
| | | | | |
1 MADDEEEIIQ KVEVKPDEFN GLIGSIAGNL IRDKVGGAGG DILGGLASNF FGGGGGGGGG 60
61 GGGGGFGGGN GGFGGGSNYD QGGNGNSGDQ QKRKRDMAKD LIGGIFDNVV NRKGKKEQDN 120
121 YGGGGNYGGG GGNQGGGGGG GFNFNDIGGL INSMGGGGGG GQRQGGGGGG FGDILGGIGS 180
181 LIGGGGGGQY NGGGGNVNPN NLNGGMVNVI GNLIGEAAHR FLGVDPGTGR IIGAVAGNVI 240
241 MGLGGKDNSL GNIG
|
| Detection Method: |  |
| Confidence: | 17.39794 |
| Match: | 2quaA |
| Description: | No description for 2quaA was found. |
|
Region A: Residues: [255-320] |
1 11 21 31 41 51
| | | | | |
1 KVILDNIISG KFRRDVDPFV RPGPDPDRGG GGSGPSPISP RPTTEPQDFY ELRDQCLESK 60
61 RLFEDP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [321-780] |
1 11 21 31 41 51
| | | | | |
1 QFLANDSSLF FSKRPPKRVE WLRPGEITRE PQLITEGHSR FDVIQGELGD CWLLAAAANL 60
61 TLKDELFYRV VPPDQSFTEN YAGIFHFQFW QYGKWVDVVI DDRLPTSNGE LLYMHSASNN 120
121 EFWSALLEKA YAKLFGSYEA LKGGTTSEAL EDMTGGLTEF IDLKNPPRNL MQMMMRGFEM 180
181 GSLFGCSIEA DPNVWEAKMS NGLVKGHAYS ITGCRIVDGP NGQTCILRIR NPWGNEQEWN 240
241 GPWSDNSREW RSVPDSVKQD MGLKFDHDGE FWMSFDDFMR NFEKMEICNL GPDVMDEVYQ 300
301 MTGVKAAGMV WAANTHDGAW VRNQTAGGCR NYINTFANNP QFRVQLTDSD PDDDDELCTV 360
361 IFAVLQKYRR NLKQDGLDNV PIGFAVYDAG NNRGRLSKQF FAANKSAMRS AAFINLREMT 420
421 GRFRVPPGNY VVVPSTFEPN EEAEFMLRVY TNGFIESEEL
|
| Detection Method: | |
| Confidence: | 163.0 |
| Match: | 1kfuL |
| Description: | Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 3.19059336788201 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 3.05412701733177 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 2.93596559605971 | bayes_pls_golite062009 |
| endopeptidase activity | 2.91734319991078 | bayes_pls_golite062009 |
| hydrolase activity | 2.43328552376748 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| protein binding | 1.92445772322782 | bayes_pls_golite062009 |
| binding | 1.92046698500094 | bayes_pls_golite062009 |
| transporter activity | 1.21845572420504 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.19670958990587 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.07520173658976 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.00091316610003 | bayes_pls_golite062009 |
| signal transducer activity | 0.9347662946007 | bayes_pls_golite062009 |
| molecular transducer activity | 0.9347662946007 | bayes_pls_golite062009 |
| calcium ion binding | 0.687204894708051 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.495368836247989 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.484449686814032 | bayes_pls_golite062009 |
| transcription regulator activity | 0.354062437867002 | bayes_pls_golite062009 |
| nucleic acid binding | 0.313326619937245 | bayes_pls_golite062009 |
| DNA binding | 0.306964954191276 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.246369226539662 | bayes_pls_golite062009 |
| calcium-dependent cysteine-type endopeptidase activity | 0.196538841514154 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.193338880082314 | bayes_pls_golite062009 |
| tubulin binding | 0.11107511867058 | bayes_pls_golite062009 |
