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View Structure Prediction Details

Protein: DING_BACSU
Organism: Bacillus subtilis subsp. subtilis str. 168
Length: 931 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DING_BACSU.

Description E-value Query
Range
Subject
Range
gi|52003959, gi|... - gi|52786119|ref|YP_091948.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsi...
579.0 [0..1] [929..1]

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Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKQRFVVID VETTGNSPKK GDKIIQIAAV VIENGQITER FSKYINPNKS IPAFIEQLTG  60
   61 ISNQMVENEQ PFEAVAEEVF QLLDGAYFVA HNIHFDLGFV KYELHKAGFQ LPDCEVLDTV 120
  121 ELSRIVFPGF EGYKLTELSE ELQLRHDQPH RADSDAEVTG LIFLEILEKL RQLPYPTLKQ 180
  181 LRRL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.09691
Match: 2guiA
Description: No description for 2guiA was found.

Predicted functions:

Term Confidence Notes
exonuclease activity 1.80771920515619 bayes_pls_golite062009
nuclease activity 1.80465910244067 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 1.57563059592056 bayes_pls_golite062009
hydrolase activity 1.3554844973302 bayes_pls_golite062009
catalytic activity 1.25233849524628 bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 0.776144771215545 bayes_pls_golite062009
deoxyribonuclease activity 0.745159527918618 bayes_pls_golite062009
ribonuclease activity 0.567315548679559 bayes_pls_golite062009
DNA polymerase activity 0.292394942678782 bayes_pls_golite062009
endonuclease activity 0.164428265680495 bayes_pls_golite062009
DNA-directed DNA polymerase activity 0.135239303066181 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [185-931]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQHFISDLTH LLDMFINENR HTEIPGYTRF SSFSVREPEA IDVRINEDEN FSFEIESWEA  60
   61 GNEKALSELM PGYEKRDGQM MMMREVADAF ANREHALIEA PPGIGKTIGY LIPAALFAKK 120
  121 SKKPVIISTY STLLQQQILT KDLPIVQDLF PFPVTAAILK GQSHYLCLYK FEQVLHEEDD 180
  181 NYDAVLTKAQ LLVWLTETNT GDVAELNLPS GGKLLWDRLA YDDDSYKRSR SEHVIGFYER 240
  241 AKQIAMRSDL VITNHSLLLT DEGSHKKRLP ESGTFIIDEA HHFERAASEH LGKRATYIEL 300
  301 HTKLSRIGTL KEQGLLKKMR QLFQRNSLPV DSFFELEEWL QHVQAESDAF FSSVHSFVKR 360
  361 RKPKEDLNRL VFKVNKESQD KSWSILTDGA ERLCSMLTHL QQLFEAQSSL MEKHLKGMKS 420
  421 KTVFLADEYQ RSMKGLQHYC QTLQKLFFGS DDDEAVWIEI DAKGAKNAVA IYAQPLEPGE 480
  481 LLADQFFARK NSVVLTSATL TVEGSFQFMI ERLGLSDFFP RTMRIESPFS YDERMQVMIP 540
  541 KEMKSIQDTG QPEFIQDTAR YIELMAKEKQ PKILVLFTSH DMLKKVHQEL KHNMSASGIQ 600
  601 LLAQGITGGS PGKLMKTFKT SNQAILLGTN HFWEGVDFPG DELTTVMIVR LPFRSPDHPL 660
  661 HAAKCELARK KGKNPFQTVS LPEAVLTFRQ GIGRLLRSAG DKGTIIILDR RIKTAGYGRL 720
  721 FLDALPTTSV SEMTDSELEA YVAGEKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 98.39794
Match: 2fdcA
Description: No description for 2fdcA was found.

Predicted functions:

Term Confidence Notes
nucleoside-triphosphatase activity 1.24600280608126 bayes_pls_golite062009
pyrophosphatase activity 1.24473801560965 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 1.22399477088226 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 1.22305439350957 bayes_pls_golite062009
binding 1.15116915808666 bayes_pls_golite062009
hydrolase activity 1.12103771739722 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
ATPase activity 0.586053527252563 bayes_pls_golite062009
helicase activity 0.113520297233174 bayes_pls_golite062009
DNA-dependent ATPase activity 0.0863785441153608 bayes_pls_golite062009
nucleotide binding 0.0188404002299471 bayes_pls_golite062009
purine nucleotide binding 0.0142207617615038 bayes_pls_golite062009
purine ribonucleotide binding 0.00410396371520677 bayes_pls_golite062009
ribonucleotide binding 0.0038904924070306 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle