YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265409, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	323 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265409, gi|....

Description	E-value	Query Range	Subject Range
gi\|25286366 - pir\|\|G84127 phosphotransacetylase pta [imported] - Bacillus halodurans (strain C-125) gi\|10176448, gi\|... - gi\|15616385\|ref\|NP_244690.1\| phosphotransacetylase [Bacillus halodurans C-125], gi\|10176448\|dbj\|BAB0...	0.0	[1..323]	[1..323]
gi\|78358281, gi\|... - gi\|78358281\|ref\|YP_389730.1\| phosphate acetyltransferase [Desulfovibrio desulfuricans subsp. desulfu...	0.0	[2..322]	[391..712]
gi\|120601394, gi... - gi\|120601394\|ref\|YP_965794.1\| phosphate acetyltransferase [Desulfovibrio vulgaris subsp. vulgaris DP... gi\|241908527, gi... - gi\|241908527\|ref\|ZP_04793094.1\| phosphate acetyltransferase [Desulfovibrio vulgaris RCH1], gi\|241879... PTA_DESVH - Phosphate acetyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 830...	0.0	[2..322]	[376..697]
gi\|148571241, gi... - gi\|91771383\|ref\|ZP_01273187.1\| Phosphate acetyltransferase [Psychrobacter sp. PRwf-1], gi\|91719568\|g...	1.0E-98	[2..322]	[390..710]
gi\|23092549 - gi\|23092549\|gb\|AAN08360.1\| phosphotransacetylase [Photorhabdus temperata] gi\|23092549\|gb\|A... - phosphotransacetylase [Photorhabdus temperata]	5.0E-98	[3..322]	[384..703]
gi\|89201474, gi\|... - gi\|89201474\|ref\|ZP_01180214.1\| Phosphate acetyltransferase [Bacillus cereus subsp. cytotoxis NVH 391...	5.0E-98	[1..323]	[1..323]
gi\|89205932, gi\|... - gi\|89205932\|ref\|ZP_01184497.1\| Phosphate acetyltransferase [Bacillus weihenstephanensis KBAB4], gi\|8... gi\|229026821, gi... - gi\|229026821\|ref\|ZP_04183152.1\| Phosphate acetyltransferase [Bacillus cereus AH1272], gi\|228734485\|g... gi\|228647256, gi... - gi\|229136203\|ref\|ZP_04264954.1\| Phosphate acetyltransferase [Bacillus cereus BDRD-ST196], gi\|2286472...	8.0E-98	[1..323]	[1..323]
gi\|94988599, gi\|... - gi\|94988599\|ref\|YP_596700.1\| phosphotransacetylase [Streptococcus pyogenes MGAS9429], gi\|94542107\|gb... gi\|94545931, gi\|... - gi\|94992423\|ref\|YP_600522.1\| phosphotransacetylase [Streptococcus pyogenes MGAS2096], gi\|94545931\|gb... gi\|209540612, gi... - gi\|209559411\|ref\|YP_002285883.1\| Phosphate acetyltransferase [Streptococcus pyogenes NZ131], gi\|2095... gi\|56807624 - gi\|56807624\|ref\|ZP_00365523.1\| COG0280: Phosphotransacetylase [Streptococcus pyogenes M49 591]	2.0E-97	[2..323]	[4..327]
gi\|56965668, gi\|... - gi\|56965668\|ref\|YP_177402.1\| phosphotransacetylase [Bacillus clausii KSM-K16], gi\|56911914\|dbj\|BAD66...	2.0E-97	[1..323]	[1..323]

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Predicted Domain #1

Region A:
Residues: [1-323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLFTTVKE KVQGKGISIV LPEGTDERIL GAAERLAKEE LVKPILVGNK EEISAKAASM  60
   61 NLTLAGVDIY DPATYEEMDA MVASFVERRK GKATEEDARK ILKDENYFGT MLVYMGKAHG 120
  121 LVSGAAHSTA DTVRPALQII KTKPGVTKTS GVFIMVREEE KYVFADCAIN IAPNSQDLAE 180
  181 IGIESAKTAE LFGIDPRVAM LSFSTKGSAK SPETEKVVEA TRIAKEMAPE LTLDGEFQFD 240
  241 AAFVPSVAEK KAPGSTIKGD ANVFVFPSLE AGNIGYKIAQ RLGNFEAVGP ILQGLNMPVN 300
  301 DLSRGCNEEE VYKLALITAA QAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.69897
Match:	1td9A
Description:	Crystal Structure of a Phosphotransacetylase from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
isocitrate dehydrogenase activity	3.23390318382614	bayes_pls_golite062009
catalytic activity	3.08295953338337	bayes_pls_golite062009
isocitrate dehydrogenase (NADP+) activity	1.9222343186159	bayes_pls_golite062009
phosphate acetyltransferase activity	1.74012698942695	bayes_pls_golite062009
isocitrate dehydrogenase (NAD+) activity	1.7326477726595	bayes_pls_golite062009
oxidoreductase activity	1.60089239108254	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.58576093894687	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.57480869322386	bayes_pls_golite062009
acetyltransferase activity	0.77398130301043	bayes_pls_golite062009
3-isopropylmalate dehydrogenase activity	0.12718051238769	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: