| Protein: | gi|51893925, gi|... |
| Organism: | Symbiobacterium thermophilum IAM 14863 |
| Length: | 235 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51893925, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
243.0 | [0..2] | [215..1] |
|
Region A: Residues: [1-235] |
1 11 21 31 41 51
| | | | | |
1 MARKSVDTEA ILRKLEEMYP DAKCALNHRN AFELLVATVL SAQCTDARVN IVTARIFPRY 60
61 NRPEHFAALS VDEIGEMIRD CGLWKSKAKN IQGLSQMLLE KHGGEVPSTM EELIQLPGVG 120
121 RKTANVVLSN AFGIPAIAVD THVFRVANRL GLAEAKTPEE TERQLMERIP REYWSQAHHW 180
181 LIYHGRQVCH ARNPQCSQCP LLPHCRFGRQ AGKGSVQRAR VSSGRAARRA GGPAR
|
| Detection Method: |  |
| Confidence: | 62.30103 |
| Match: | 2abkA |
| Description: | REFINEMENT OF THE NATIVE STRUCTURE OF ENDONUCLEASE III TO A RESOLUTION OF 1.85 ANGSTROM |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA N-glycosylase activity | 4.8124964619976 | bayes_pls_golite062009 |
| hydrolase activity, hydrolyzing N-glycosyl compounds | 4.26870112679392 | bayes_pls_golite062009 |
| DNA-(apurinic or apyrimidinic site) lyase activity | 3.71152530486175 | bayes_pls_golite062009 |
| oxidized base lesion DNA N-glycosylase activity | 2.49872706126491 | bayes_pls_golite062009 |
| hydrolase activity | 2.39042189031819 | bayes_pls_golite062009 |
| 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity | 2.21048599823382 | bayes_pls_golite062009 |
| hydrolase activity, acting on glycosyl bonds | 2.18053745735048 | bayes_pls_golite062009 |
| catalytic activity | 2.13345932727422 | bayes_pls_golite062009 |
| damaged DNA binding | 2.00388798014411 | bayes_pls_golite062009 |
| alkylbase DNA N-glycosylase activity | 1.5832578018127 | bayes_pls_golite062009 |
| DNA binding | 1.44394874535958 | bayes_pls_golite062009 |
| nucleic acid binding | 1.36800347239439 | bayes_pls_golite062009 |
| oxidized purine base lesion DNA N-glycosylase activity | 1.32985950765371 | bayes_pls_golite062009 |
| oxidized pyrimidine base lesion DNA N-glycosylase activity | 1.2016453685638 | bayes_pls_golite062009 |
| binding | 1.15752946565805 | bayes_pls_golite062009 |
| DNA-3-methyladenine glycosylase I activity | 1.06383943982125 | bayes_pls_golite062009 |
| uracil DNA N-glycosylase activity | 0.879508131574476 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.85419760398899 | bayes_pls_golite062009 |
| purine-specific mismatch base pair DNA N-glycosylase activity | 0.68578837518217 | bayes_pls_golite062009 |
| mismatch base pair DNA N-glycosylase activity | 0.661651574677137 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.57099109384393 | bayes_pls_golite062009 |
| transcription regulator activity | 0.493252955870142 | bayes_pls_golite062009 |
| protein binding | 0.0921713980805489 | bayes_pls_golite062009 |
| carbon-oxygen lyase activity | 0.0676784802238829 | bayes_pls_golite062009 |
