YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11347548
Organism:	Pseudomonas aeruginosa
Length:	639 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11347548.

Description	E-value	Query Range	Subject Range
gi\|95109008, gi\|... - gi\|95109008\|emb\|CAK13704.1\| ATP-dependent metalloprotease FtsH [Pseudomonas entomophila L48], gi\|104... gi\|95109008 - gi\|95109008\|emb\|CAK13704.1\| ATP-dependent metalloprotease FtsH [Pseudomonas entomophila L48]	0.0	[1..639]	[1..635]
gi\|28871631, gi\|... - gi\|28871631\|ref\|NP_794250.1\| cell division protein FtsH [Pseudomonas syringae pv. tomato str. DC3000... tr\|Q87WP8\|Q87WP8... - ATP-dependent zinc metalloprotease FtsH OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=ftsH P...	0.0	[1..639]	[1..634]
FTSH_SALTI - Cell division protease ftsH OS=Salmonella typhi GN=hflB PE=3 SV=1 FTSH_SALTY - Cell division protease ftsH OS=Salmonella typhimurium GN=hflB PE=3 SV=1 gi\|214000933 - gi\|214000933\|ref\|ZP_03411668.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica s... gi\|224585091, gi... - gi\|224585091\|ref\|YP_002638890.1\| cell division protein [Salmonella enterica subsp. enterica serovar ... gi\|56129482, gi\|... - gi\|56415225\|ref\|YP_152300.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica sero... gi\|238910089 - gi\|238910089\|ref\|ZP_04653926.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica s... gi\|207858544, gi... - gi\|207858544\|ref\|YP_002245195.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica ... gi\|213052988 - gi\|213052988\|ref\|ZP_03345866.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica s... lcl\|NC_016856.1_... - [gene=hflB] [protein=ATP-dependent metalloprotease] [protein_id=YP_005239474.1] [location=complement... gi\|213425426 - gi\|213425426\|ref\|ZP_03358176.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica s... gi\|213852786 - gi\|213852786\|ref\|ZP_03382318.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica s... gi\|29143547, gi\|... - gi\|29143547\|ref\|NP_806889.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica sero... gi\|160867488, gi... - gi\|161506141\|ref\|YP_001573253.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. arizonae ... FTSH_SALTY - ATP-dependent zinc metalloprotease FtsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1 gi\|16762058 - gi\|16762058\|ref\|NP_457675.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica sero... gi\|161616303, gi... - gi\|161616303\|ref\|YP_001590268.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica ... FTSH_SALTI - ATP-dependent zinc metalloprotease FtsH OS=Salmonella typhi GN=ftsH PE=3 SV=1 gi\|197364155, gi... - gi\|197364155\|ref\|YP_002143792.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica ... FTSH_SALTY - ATP-dependent zinc metalloprotease FtsH OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... gi\|205273978, gi... - gi\|205354197\|ref\|YP_002227998.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica ...	0.0	[1..635]	[1..633]
tr\|F3G3S6\|F3G3S6... - ATP-dependent zinc metalloprotease FtsH OS=Pseudomonas syringae pv. pisi str. 1704B GN=ftsH PE=3 SV=... gi\|237798556 - gi\|237798556\|ref\|ZP_04587017.1\| peptidase M41, FtsH [Pseudomonas syringae pv. oryzae str. 1_6] gi\|66047414, gi\|... - gi\|66047414\|ref\|YP_237255.1\| peptidase M41, FtsH [Pseudomonas syringae pv. syringae B728a], gi\|63258...	0.0	[1..639]	[1..634]
gi\|205357195, gi... - gi\|205357195\|ref\|ZP_02345811.2\| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. ente... gi\|197248059, gi... - gi\|197248059\|ref\|YP_002148220.1\| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. ent... gi\|195873641, gi... - gi\|195873641\|ref\|ZP_02697399.2\| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. ente... gi\|194471603, gi... - gi\|194471603\|ref\|ZP_03077587.1\| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. ente... gi\|194447870, gi... - gi\|194447870\|ref\|YP_002047324.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica ... gi\|194442507, gi... - gi\|194442507\|ref\|YP_002042552.1\| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. ent... gi\|205348591, gi... - gi\|205360607\|ref\|ZP_02684667.2\| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. ente... gi\|205343557, gi... - gi\|205359745\|ref\|ZP_02831638.2\| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. ente... gi\|205359196, gi... - gi\|205359196\|ref\|ZP_02668061.2\| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. ente... gi\|62181804, gi\|... - gi\|62181804\|ref\|YP_218221.1\| ATP-dependent metalloprotease [Salmonella enterica subsp. enterica sero... gi\|205333758, gi... - gi\|205358490\|ref\|ZP_02656962.2\| ATP-dependent metallopeptidase HflB [Salmonella enterica subsp. ente...	0.0	[1..635]	[4..636]
gi\|37528354, gi\|... - gi\|37528354\|ref\|NP_931699.1\| ATP-dependent metalloprotease [Photorhabdus luminescens subsp. laumondi...	0.0	[1..634]	[4..634]
gi\|71735142, gi\|... - gi\|71735142\|ref\|YP_276318.1\| ATP-dependent metalloprotease FtsH [Pseudomonas syringae pv. phaseolico...	0.0	[1..639]	[4..637]
gi\|77381002, gi\|... - gi\|77456999\|ref\|YP_346504.1\| membrane protease FtsH catalytic subunit [Pseudomonas fluorescens Pf0-1...	0.0	[1..638]	[1..634]
gi\|70734331, gi\|... - gi\|70734331\|ref\|YP_257971.1\| ATP-dependent metalloprotease FtsH [Pseudomonas fluorescens Pf-5], gi\|6...	0.0	[1..639]	[1..634]
gi\|82715275, gi\|... - gi\|82737622\|ref\|ZP_00900469.1\| Peptidase M41, FtsH [Pseudomonas putida F1], gi\|82715275\|gb\|EAP50342.... tr\|E4R5L8\|E4R5L8... - ATP-dependent zinc metalloprotease FtsH OS=Pseudomonas putida (strain BIRD-1) GN=ftsH PE=3 SV=1	0.0	[1..639]	[1..634]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKNLILWLI IAAVLVTVMN NFSSPSEPQT LNYSDFIQQV KDGKVERVTV DGYVITGKRS  60
   61 DGDTFKTIRP AIQDNGLIGD LVNNNVVVEG KQPEQQSIWT QLLVASFPIL VIIAVFMFFM 120
  121 RQMQGGGGGR GG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.853872
Match:	PF06480.6
Description:	No description for PF06480.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-639]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMSFGKSKAR LLSEDQVKTT FADVAGCDEA KEEVSELVEF LRDPGKFQRL GGRIPRGVLM  60
   61 VGPPGTGKTL LAKAIAGEAK VPFFTISGSD FVEMFVGVGA SRVRDMFDQA KKHAPCIIFI 120
  121 DEIDAVGRHR GAGLGGGHDE REQTLNQLLV EMDGFEMNDG IIVIAATNRP DVLDPALLRP 180
  181 GRFDRQVVVG LPDIRGREQI LKVHMRKVPL GDHVDPAVIA RGTPGFSGAD LANLVNEASL 240
  241 FAARSNKRIV DMREFELAKD KIMMGAERKT MVMSEKEKRN TAYHEAGHAI VGRLVPEHDP 300
  301 VYKVSIIPRG RALGVTMFLP EEDRYSLSKR ALESQICSLF GGRIAEEMTL GFEGVTTGAS 360
  361 NDIMRATQLA RNMVTKWGLS EKLGPLMYAE EEGEVFLGRS AGSQHANVSG ETAKMIDQEV 420
  421 RRIIDDCYGT AKRLLDENRD KLEMMADALM KYETIDSDQI DDIMAGRVPR EPRDWQGGSG 480
  481 TGTPPANLEE SGRRENTPPI GGPAGEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	2ce7A
Description:	EDTA treated
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	2.37825960678081	bayes_pls_golite062009
binding	1.31163400557981	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
GTPase activity	0.69051700701659	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.489050800152752	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.485303203507997	bayes_pls_golite062009
pyrophosphatase activity	0.482413717607895	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.457886666766291	bayes_pls_golite062009
purine nucleotide binding	0.428373955572763	bayes_pls_golite062009
purine ribonucleotide binding	0.424644011903671	bayes_pls_golite062009
ribonucleotide binding	0.424583288440993	bayes_pls_golite062009
nucleotide binding	0.422354428195324	bayes_pls_golite062009
peptidase activity	0.0753480171639475	bayes_pls_golite062009
ATP binding	0.04834397972685	bayes_pls_golite062009
adenyl ribonucleotide binding	0.0149501427627318	bayes_pls_golite062009
adenyl nucleotide binding	0.00365326483311895	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: