YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49187943, gi\|...
Organism:	Bacillus anthracis str. Sterne
Length:	808 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49187943, gi|....

Description	E-value	Query Range	Subject Range
gi\|89157008, gi\|... - gi\|89204994\|ref\|ZP_01183567.1\| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R [Bacillus wei...	0.0	[1..800]	[1..806]
gi\|42740209, gi\|... - gi\|42784278\|ref\|NP_981525.1\| ribonuclease R [Bacillus cereus ATCC 10987], gi\|42740209\|gb\|AAS44133.1\|...	0.0	[1..800]	[1..798]
gi\|196029617, gi... - gi\|196039457\|ref\|ZP_03106762.1\| ribonuclease R [Bacillus cereus NVH0597-99], gi\|196029617\|gb\|EDX6821... gi\|229094215, gi... - gi\|229094215\|ref\|ZP_04225294.1\| Ribonuclease R [Bacillus cereus Rock3-42], gi\|228689207\|gb\|EEL43029.... gi\|52140440, gi\|... - gi\|52140440\|ref\|YP_086389.1\| ribonuclease R (RNase R) [Bacillus cereus E33L], gi\|51973909\|gb\|AAU1545...	0.0	[1..760]	[1..760]
gi\|49481126, gi\|... - gi\|49481126\|ref\|YP_039117.1\| ribonuclease R (RNase R) [Bacillus thuringiensis serovar konkukian str....	0.0	[1..760]	[1..760]
gi\|30023166, gi\|... - gi\|30023166\|ref\|NP_834797.1\| exoribonuclease II [Bacillus cereus ATCC 14579], gi\|29898726\|gb\|AAP1199...	0.0	[1..760]	[1..760]
gi\|47555956, gi\|... - gi\|47567335\|ref\|ZP_00238048.1\| exoribonuclease, VacB/RNase II family [Bacillus cereus G9241], gi\|475...	0.0	[16..800]	[1..785]
gi\|89200099, gi\|... - gi\|89200099\|ref\|ZP_01178854.1\| 3'-5' exoribonuclease, VacB and RNase II:Ribonuclease R [Bacillus cer...	0.0	[1..765]	[1..763]
RNR_BACSU - Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=2 SV=1 gi\|221324838 - gi\|221324838\|ref\|ZP_03606132.1\| ribonuclease R [Bacillus subtilis subsp. subtilis str. SMY] gi\|221320554 - gi\|221320554\|ref\|ZP_03601848.1\| ribonuclease R [Bacillus subtilis subsp. subtilis str. JH642] gi\|221315638 - gi\|221315638\|ref\|ZP_03597443.1\| ribonuclease R [Bacillus subtilis subsp. subtilis str. NCIB 3610] RNR_BACSU - Ribonuclease R OS=Bacillus subtilis GN=rnr PE=3 SV=1	0.0	[1..763]	[1..753]
gi\|254851139, gi... - gi\|254851139\|ref\|ZP_05240489.1\| ribonuclease R [Vibrio cholerae MO10], gi\|254846844\|gb\|EET25258.1\| r... tr\|C6YKQ8\|C6YKQ8... - Ribonuclease R OS=Vibrio cholerae MO10 GN=rnr PE=3 SV=1	0.0	[10..790]	[25..819]
gi\|89098803, gi\|... - gi\|89098803\|ref\|ZP_01171684.1\| ribonuclease R [Bacillus sp. NRRL B-14911], gi\|89086479\|gb\|EAR65599.1...	0.0	[1..746]	[1..744]

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Predicted Domain #1

Region A:
Residues: [1-720]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEIIQEHID KLLLFMREEA YKPLTIQELE EAFGIEGSEG FKDFVKALVT MEEKGLVIRT  60
   61 RSNRYGLPEK MNLIRGKLIG HARGFAFVVP DEKKTGDDDL FIPPTELNGA LHGDTVLARL 120
  121 SSQSSGSRQE GSIVRILERG TKELVGTYTE SKNFGFVIPD NKRWTSDIFV LKSASMGAVE 180
  181 GHKVVVKITS YPENRLSAEG EVIQILGHKN DPGVDILSVI HKHHLPLAFP EEVMEHANSV 240
  241 PETISEEDLK DRRDLRDQMI VTIDGADAKD LDDAVTVTKL ENGNYKLGVH IADVSHYVQE 300
  301 GSPIDVEAAE RATSVYLVDR VIPMIPHRLS NGICSLNPKV DRLTLSCEME INNLGDVVKH 360
  361 EIFQSVIKTT ERMTYADVRS ILEDEDEELM KRYEPLVPMF KEMGQLAQIL REKRMRRGAI 420
  421 DFDFKEAKVL VDEEGKPTDV VMRDRSVSEK LIEEFMLVAN ETVAEHFHWM NVPFMYRVHE 480
  481 DPKEDKLERF FEFVTNFGYA VKGRANEVHP RALQQILEMV QGQPEEVVIS TVMLRSMKQA 540
  541 RYDADSLGHF GLSTEFYTHF TSPIRRYPDT IVHRLIREYI INGKVDNETQ AKWREKLPEI 600
  601 AEHSSNMERR AVEAERETDE LKKAEYMLDK IGEEYDGMIS SVTNFGLFVE LPNTIEGLVH 660
  661 VSYLTDDYYR YDEQHFAMIG ERTGNVFRIG DEITIRVINV NKDERAIDFE IVGMKGTPRR 720
  721

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	2ix0A
Description:	No description for 2ix0A was found.

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.50222432647158	bayes_pls_golite062009
binding	2.45645422079711	bayes_pls_golite062009
ribonuclease activity	2.29464134578835	bayes_pls_golite062009
DNA binding	2.01509187496805	bayes_pls_golite062009
RNA binding	0.764074810825563	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.645338044440112	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.645324285187609	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.645324285187609	bayes_pls_golite062009
exoribonuclease activity	0.625278911312822	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	0.593594938681299	bayes_pls_golite062009
transcription regulator activity	0.579049615800331	bayes_pls_golite062009
hydrolase activity	0.184672913742179	bayes_pls_golite062009
structure-specific DNA binding	0.00505175337890207	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [721-808]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFKDRPVVIE QPRTGRKKRG GRSERSNERG GERGTGRKFD RGGKGKGRGS ASASTSASQP  60
   61 GKKDGNGKKK KAFFENVPGF KKKKKKRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: