YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256089, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256089, gi|....

Description	E-value	Query Range	Subject Range
gi\|52143606, gi\|... - gi\|52143606\|ref\|YP_083222.1\| S-layer protein and N-acetylmuramoyl-L-alanine amidase fusion protein [...	7.0E-91	[1..414]	[1..413]
gi\|229155437, gi... - gi\|229155437\|ref\|ZP_04283546.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus cereus ATCC 4... gi\|47557536, gi\|... - gi\|47565546\|ref\|ZP_00236587.1\| S-layer protein / N-acetylmuramoyl-L-alanine amidase [Bacillus cereus...	1.0E-85	[1..414]	[1..414]
gi\|30021626, gi\|... - gi\|30021626\|ref\|NP_833257.1\| S-layer protein / N-acetylmuramoyl-L-alanine amidase [Bacillus cereus A... gi\|228654682, gi... - gi\|229128794\|ref\|ZP_04257771.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus cereus BDRD-C...	6.0E-85	[1..412]	[1..410]
gi\|75762723, gi\|... - gi\|75762723\|ref\|ZP_00742557.1\| S-layer protein / N-acetylmuramoyl-L-alanine amidase [Bacillus thurin... gi\|228854585, gi... - gi\|228905040\|ref\|ZP_04069079.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus thuringiensis... gi\|218898613, gi... - gi\|218898613\|ref\|YP_002447024.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus cereus G9842...	1.0E-84	[1..412]	[1..410]
gi\|254760381 - gi\|254760381\|ref\|ZP_05212405.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|190563339, gi... - gi\|190565312\|ref\|ZP_03018232.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis Tsi... gi\|177649384, gi... - gi\|177649384\|ref\|ZP_02932386.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|170130488, gi... - gi\|170704687\|ref\|ZP_02895153.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|170670831, gi... - gi\|170685471\|ref\|ZP_02876695.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|167637778, gi... - gi\|167637778\|ref\|ZP_02396057.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|49179287, gi\|... - gi\|49185360\|ref\|YP_028612.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. Sterne], gi... gi\|167631717, gi... - gi\|167631717\|ref\|ZP_02390044.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|47502965, gi\|... - gi\|47527817\|ref\|YP_019166.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. 'Ames Ances... gi\|164715611, gi... - gi\|165868885\|ref\|ZP_02213545.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|30257152, gi\|... - gi\|30262520\|ref\|NP_844897.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. Ames], gi\|3... gi\|254685096 - gi\|254685096\|ref\|ZP_05148956.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|229267524, gi... - gi\|229603116\|ref\|YP_002866844.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis st... gi\|228813511, gi... - gi\|228946165\|ref\|ZP_04108499.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus thuringiensis... gi\|227004980, gi... - gi\|227814662\|ref\|YP_002814671.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis st... gi\|254751861 - gi\|254751861\|ref\|ZP_05203898.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|254743269 - gi\|254743269\|ref\|ZP_05200954.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|254737546 - gi\|254737546\|ref\|ZP_05195249.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|254722504 - gi\|254722504\|ref\|ZP_05184292.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str...	4.0E-84	[1..412]	[1..410]
gi\|42780958, gi\|... - gi\|42780958\|ref\|NP_978205.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus ATCC 10987], gi\|427...	4.0E-84	[1..414]	[1..414]
gi\|49476720, gi\|... - gi\|49476720\|ref\|YP_036636.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar konk...	4.0E-84	[1..412]	[1..410]
gi\|21400397, gi\|... - gi\|65319817\|ref\|ZP_00392776.1\| COG0860: N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. ...	9.0E-83	[1..412]	[1..409]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNRIIAAGV IAASILSYSS SSFAQTKTFP DVQTGHWAED SINYLAEKGA VTGNEKGMFE  60
   61 PGKEITRAEA ATMMAKILNL PIDKNAKPSY ADSQKHWATP IIAAVEKAGV VKGTGNGFEP 120
  121 DGKIDRVSMA SLLVEAYKLE SKVNGTPATK FKDLETLNWG KEKANILVEL GISVGTGDKW 180
  181 EPKKILTKAE AAQFI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [196-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKADSLKVGN PLVEKVVIID PGHGGFDPGN PGQGVEESKI VFDTSLRLQK LLEKNTPLKA  60
   61 LLTREENGNP GSNKNESLAN RVKFGQENNA DIFVSIHANS SEKHDGHGTE TYYYKKSKRG 120
  121 EETQIEKDSE VLAKKIQNRV VEALHTRDRK IKDDHSLYVV NNNTVPAVLT ELAFIDNDID 180
  181 NGKLATESGR QIAAEAVYAG ILDYYEWKGF DVSKYRLAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	1jwqA
Description:	Structure of the catalytic domain of CwlV, N-acetylmuramoyl-L-alanine amidase from Bacillus(Paenibacillus) polymyxa var.colistinus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	3.67722840912402	bayes_pls_golite062009
peptidase activity	2.70319066310115	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.44249748878472	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	2.30136636820249	bayes_pls_golite062009
carboxypeptidase activity	1.95498314957158	bayes_pls_golite062009
catalytic activity	1.3989281287879	bayes_pls_golite062009
N-acetylmuramoyl-L-alanine amidase activity	1.02095967695644	bayes_pls_golite062009
exopeptidase activity	0.606503700246216	bayes_pls_golite062009
binding	0.252136075715404	bayes_pls_golite062009
metallopeptidase activity	0.117214777864168	bayes_pls_golite062009
protein binding	0.0314733407355351	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: