YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256022, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	556 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256022, gi|....

Description	E-value	Query Range	Subject Range
gi\|30019830, gi\|... - gi\|30019830\|ref\|NP_831461.1\| zinc-dependent hydrolase [Bacillus cereus ATCC 14579], gi\|29895375\|gb\|A...	4.0E-56	[1..556]	[1..556]
gi\|57640094, gi\|... - gi\|57640094\|ref\|YP_182572.1\| ABC-type iron(III) transport system, permease component [Thermococcus k...	4.0E-50	[6..547]	[26..558]
gi\|51893889, gi\|... - gi\|51893889\|ref\|YP_076580.1\| ABC transporter permease protein [Symbiobacterium thermophilum IAM 1486...	2.0E-48	[10..552]	[20..564]
gi\|19703719, gi\|... - gi\|19713847\|gb\|AAL94580.1\| Iron(III)-transport system permease protein sfuB [Fusobacterium nucleatum...	2.0E-45	[1..550]	[3..544]
gi\|55229797, gi\|... - gi\|55377072\|ref\|YP_134922.1\| sulfate transport system permease protein [Haloarcula marismortui ATCC ...	2.0E-45	[6..551]	[22..598]
gi\|52143670, gi\|... - gi\|52143670\|ref\|YP_083158.1\| iron/thiamine ABC transporter permease/Zn-dependent hydrolase [Bacillus...	7.0E-45	[1..556]	[1..556]
gi\|56911654, gi\|... - gi\|56965410\|ref\|YP_177142.1\| Fe3+ ABC transporter permease [Bacillus clausii KSM-K16], gi\|56911654\|d...	1.0E-44	[1..553]	[1..548]
gi\|119377957, gi... - gi\|69934916\|ref\|ZP_00629947.1\| Binding-protein-dependent transport systems inner membrane component ...	2.0E-44	[5..553]	[17..566]
gi\|86357744, gi\|... - gi\|86357744\|ref\|YP_469636.1\| iron(III) ABC transporter, permease protein [Rhizobium etli CFN 42], gi...	3.0E-44	[15..553]	[166..719]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNRFVSVRQ VGMTVALLLV AMLIVIPLFL ILLSSVYENS SWNFLKPFEV MQSSGLAGIF  60
   61 LNSMLLGVLV VIGATVFAFP LAFIMSKTDV GKHSKLDIVF MIPFMTPPYI GSMGWILFMQ 120
  121 PNGYFEQFFP MLKTISSSFF SLGGMVLIMS LHLFPFLYFM LKNTLLQIGS SKEEAAAVHG 180
  181 GSFFYRLRKI ILPLLVSSYV MGALLIFVKT IAEFGTPATF GRRIGFHVLT SEIHKFISSW 240
  241 PIDFSSATAL SSLLLSACML IWYMQNVLNR KYSYAMVSG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	7.15
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	3.58537618032463	bayes_pls_golite062009
ion transmembrane transporter activity	2.80971092697403	bayes_pls_golite062009
transporter activity	2.61959628899621	bayes_pls_golite062009
transmembrane transporter activity	2.4987904647792	bayes_pls_golite062009
active transmembrane transporter activity	2.27340898255405	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.21540944305844	bayes_pls_golite062009
primary active transmembrane transporter activity	2.2114363088793	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.20472634271719	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.20472634271719	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.20428578746932	bayes_pls_golite062009
cation transmembrane transporter activity	2.1096404493384	bayes_pls_golite062009
ATPase activity, coupled	1.93030736108514	bayes_pls_golite062009
ATPase activity	1.81075067696537	bayes_pls_golite062009
substrate-specific transporter activity	1.78437738324087	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.77840674197218	bayes_pls_golite062009
pyrophosphatase activity	1.74496846476252	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.73630396820621	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.73558162950226	bayes_pls_golite062009
hydrolase activity	1.08287049278589	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	0.903296665761528	bayes_pls_golite062009
iron ion transmembrane transporter activity	0.820712374206767	bayes_pls_golite062009
catalytic activity	0.720497986050919	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.634576297408942	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.379756257885133	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	0.355827905551575	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	0.344264044694329	bayes_pls_golite062009
anion transmembrane transporter activity	0.243151733261717	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.123941313236055	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [280-556]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGVKSKRYTL SIFARVVAWF YVIGLLIVSI GIPYFSILIA SLSKLRGGGL HVNNFTTSHY  60
   61 EALFTIGSPG LEALWNSFLF SLITAIIAVM IGVFLALMIR KGKKSSEKWL DMCGMLPNMV 120
  121 PGIVMVVGLI LFWNSPYMPL SIYNTPVMVI VTYVVLFLPY TVQYVKASLG QIDDSLVQAG 180
  181 SIFSGNYIYI FRKIILPLII PGILAGWAMT FTISIRELVA SLLVLPPSVE TSATFIFAQF 240
  241 EQGEVSIGMA MAVVSVGLTT LCLLLLQHME QKRKGVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.154902
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	3.90877533326679	bayes_pls_golite062009
ion transmembrane transporter activity	3.04751896510563	bayes_pls_golite062009
transporter activity	2.92901170384371	bayes_pls_golite062009
transmembrane transporter activity	2.82231503501622	bayes_pls_golite062009
active transmembrane transporter activity	2.62912035749387	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.58567076459772	bayes_pls_golite062009
primary active transmembrane transporter activity	2.58112472232827	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.57722913421807	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.57722913421807	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.57687258170314	bayes_pls_golite062009
cation transmembrane transporter activity	2.28111291142378	bayes_pls_golite062009
ATPase activity, coupled	2.26533438516544	bayes_pls_golite062009
ATPase activity	2.12523930663356	bayes_pls_golite062009
substrate-specific transporter activity	2.08705004234574	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.06571106810861	bayes_pls_golite062009
pyrophosphatase activity	2.02843508794757	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.01869168199434	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.01800287925825	bayes_pls_golite062009
hydrolase activity	1.27489880499396	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	0.980821704805916	bayes_pls_golite062009
iron ion transmembrane transporter activity	0.94280522794901	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.86861612741394	bayes_pls_golite062009
catalytic activity	0.79821499476005	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	0.689648105332081	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	0.67740655647842	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.56369901852468	bayes_pls_golite062009
anion transmembrane transporter activity	0.52374242151885	bayes_pls_golite062009
sugar transmembrane transporter activity	0.44915416750675	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.40733310972934	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: