YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29344205, gi\|...
Organism:	Enterococcus faecalis V583
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29344205, gi|....

Description	E-value	Query Range	Subject Range
gi\|67548364, gi\|... - gi\|67548364\|ref\|ZP_00426254.1\| Binding-protein-dependent transport systems inner membrane component ...	221.0	[0..38]	[299..536]
gi\|69287966, gi\|... - gi\|69287966\|ref\|ZP_00618123.1\| Binding-protein-dependent transport systems inner membrane component ...	206.0	[0..8]	[295..721]
gi\|23100928, gi\|... - gi\|23100928\|ref\|NP_694395.1\| ABC transporter permease [Oceanobacillus iheyensis HTE831], gi\|22779163...	197.0	[0..50]	[295..185]
gi\|106890679, gi... - gi\|106890679\|ref\|ZP_01357872.1\| Binding-protein-dependent transport systems inner membrane component...	196.0	[0..1]	[292..57]
gi\|56420657, gi\|... - gi\|56420657\|ref\|YP_147975.1\| ABC transporter (permease) [Geobacillus kaustophilus HTA426], gi\|563804...	189.0	[0..54]	[296..180]
gi\|71158451, gi\|... - gi\|71365746\|ref\|ZP_00656296.1\| Binding-protein-dependent transport systems inner membrane component ...	187.0	[0..14]	[297..44]
gi\|42522758, gi\|... - gi\|42522758\|ref\|NP_968138.1\| maltose/maltodextrin transport permease homologue [Bdellovibrio bacteri...	186.0	[0..15]	[298..444]
gi\|8744950, gi\|2... - gi\|8744950\|emb\|CAB95276.1\| putative sugar transport integral membrane protein [Streptomyces coelicol...	184.0	[0..2]	[299..19]
gi\|10173861, gi\|... - gi\|15613808\|ref\|NP_242111.1\| hypothetical protein BH1245 [Bacillus halodurans C-125], gi\|10173861\|db... gi\|25489748 - pir\|\|E83805 hypothetical protein BH1245 [imported] - Bacillus halodurans (strain C-125)	183.0	[0..54]	[295..191]
gi\|86285148, gi\|... - gi\|86361046\|ref\|YP_472933.1\| sugar ABC transporter, permease protein [Rhizobium etli CFN 42], gi\|862...	182.0	[0..9]	[295..66]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITSKTKTA NKLRRKNTWT ALSFIAPNFI GFFLFTLIPV ICSLILAFMS WDSFSTPEFV  60
   61 GMKNFTKMIH DDTFWISLKQ TFIYTIGVVP LTLICSLGLA ILLNRKIRGM KFFRTAFFFP 120
  121 YVTSLVAIAV VWNMLFHPTM GPINQFLKLF IENPPGWTSS STWALPAIII VSVWRFMGYY 180
  181 MILYLAGLQS VPRELYEAAS MDGAGKWNQF LNVTLPSLRP TTFFVTIMLV INCFKVFDLV 240
  241 QVMTGGGPGR ATNVLVYEIY NEAFVKFNFG YASAIAMVLF IIVLAITVAQ FKWNQHQEKV 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.221849
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
glycerol transmembrane transporter activity	5.18950109645555	bayes_pls_golite062009
polyol transmembrane transporter activity	4.82807078807389	bayes_pls_golite062009
alcohol transmembrane transporter activity	4.82807078807389	bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity	4.63318176881689	bayes_pls_golite062009
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
primary active transmembrane transporter activity	4.00217276617164	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.99891866007599	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.98211391811154	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.97908815673888	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.97858487787769	bayes_pls_golite062009
substrate-specific transporter activity	3.91409799494188	bayes_pls_golite062009
active transmembrane transporter activity	3.89128503869358	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.86345398417242	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	3.38648305647717	bayes_pls_golite062009
ATPase activity, coupled	3.32937863234927	bayes_pls_golite062009
sugar transmembrane transporter activity	3.24821418227125	bayes_pls_golite062009
ATPase activity	3.08226330066871	bayes_pls_golite062009
nucleoside-triphosphatase activity	3.00619776756793	bayes_pls_golite062009
pyrophosphatase activity	2.93295939960055	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.91418221359376	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.91133868200651	bayes_pls_golite062009
sugar:hydrogen symporter activity	2.72644761294537	bayes_pls_golite062009
cation:sugar symporter activity	2.72644761294537	bayes_pls_golite062009
ion transmembrane transporter activity	2.70116960945763	bayes_pls_golite062009
maltose-transporting ATPase activity	2.32929219092648	bayes_pls_golite062009
oligosaccharide-transporting ATPase activity	2.32929219092648	bayes_pls_golite062009
oligosaccharide transmembrane transporter activity	2.32929219092648	bayes_pls_golite062009
disaccharide transmembrane transporter activity	2.31657984484827	bayes_pls_golite062009
alpha-glucoside transmembrane transporter activity	2.31657984484827	bayes_pls_golite062009
maltose transmembrane transporter activity	2.31657984484827	bayes_pls_golite062009
glucoside transmembrane transporter activity	2.30512469377883	bayes_pls_golite062009
solute:hydrogen symporter activity	1.84116772499041	bayes_pls_golite062009
cation transmembrane transporter activity	1.82526327874202	bayes_pls_golite062009
hydrolase activity	1.57867403354317	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.69074662322395	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
catalytic activity	0.427775057748038	bayes_pls_golite062009
anion transmembrane transporter activity	0.38505555521505	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	0.171737154712589	bayes_pls_golite062009
carbohydrate-transporting ATPase activity	0.1609500785577	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.14639856424105	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: