YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350709, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	454 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350709, gi|....

Description	E-value	Query Range	Subject Range
gi\|91192126, gi\|... - gi\|91223313\|ref\|ZP_01258579.1\| putative Na+-transporting ATP synthase [Vibrio alginolyticus 12G01], ...	370.0	[0..1]	[454..1]
gi\|116185726, gi... - gi\|75856600\|ref\|ZP_00764225.1\| COG0168: Trk-type K+ transport systems, membrane components [Vibrio s...	369.0	[0..1]	[454..1]
gi\|28901285, gi\|... - gi\|28901285\|ref\|NP_800940.1\| putative Na+-transporting ATP synthase [Vibrio parahaemolyticus RIMD 22... gi\|28809798 - gi\|28809798\|dbj\|BAC62773.1\| putative Na+-transporting ATP synthase [Vibrio parahaemolyticus RIMD 221...	368.0	[0..1]	[454..1]
gi\|82721725, gi\|... - gi\|82740958\|ref\|ZP_00903690.1\| K+ transporter Trk [Shewanella sp. W3-18-1], gi\|82721725\|gb\|EAP56559....	366.0	[0..1]	[454..31]
gi\|46915426, gi\|... - gi\|54302005\|ref\|YP_131998.1\| Trk family potassium uptake protein [Photobacterium profundum SS9], gi\|...	365.0	[0..1]	[454..1]
gi\|68544551, gi\|... - gi\|68544551\|ref\|ZP_00584188.1\| K+ transporter Trk [Shewanella baltica OS155], gi\|68517748\|gb\|EAN4137...	361.0	[0..1]	[454..22]
gi\|120600814, gi... - gi\|120600814\|ref\|YP_965388.1\| TrkH family potassium uptake protein [Shewanella sp. W3-18-1], gi\|1205... gi\|77814410, gi\|... - gi\|77814410\|ref\|ZP_00813670.1\| K+ transporter Trk [Shewanella putrefaciens CN-32], gi\|77810681\|gb\|EA...	360.0	[0..1]	[454..1]
gi\|114045562, gi... - gi\|78689043\|ref\|ZP_00853708.1\| K+ transporter Trk [Shewanella sp. MR-7], gi\|78511443\|gb\|EAP24800.1\| ...	357.0	[0..1]	[454..1]
SO0057 - potassium uptake protein Trk family gi\|24345423, gi\|... - gi\|24371657\|ref\|NP_715699.1\| Trk family potassium uptake protein [Shewanella oneidensis MR-1], gi\|24...	357.0	[0..1]	[454..1]
gi\|117918516, gi... - gi\|78685382\|ref\|ZP_00850160.1\| K+ transporter Trk [Shewanella sp. ANA-3], gi\|78506760\|gb\|EAP20275.1\|...	356.0	[0..1]	[454..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSWHPSVYL AQRTSKAAKN ILAAPPLILS ISFIFLILIG TLILKLPIST TVPVTWSQSL  60
   61 FNATSAVTVT GLVVFDVGTV YTTFGQVVIA LLIQLGGLGI MTFAIVTLLA L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [112-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAKIGFLQNT IAKEAYNSTN TATLVTTAKS VLIFSLCVEL IGMIILAVSW SDELGWRTSL  60
   61 FHGFFYTISA FNNAGIGLSP DSLMPYVEDP IINLTITALF IIGGLGFTVW IDLWRKKRWD 120
  121 KLTTYSKMMI IGTISINAIA VLAIYCIEYN NPKTLVPLSE TGKWLASWFQ AVTPRTAGFN 180
  181 TLAMNEL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.958607
Match:	PF02386.7
Description:	No description for PF02386.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [299-454]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDATTAIMLM LMFIGGGSLS TASGIKVVTF MVLILATYGY LRRYDFVYVY HRGISKDTIS  60
   61 KALALAMISV GTIWASIFFL LLSENASMID IIFEAVSAFG TVGLSRGLTS NLTVTGQFII 120
  121 IFLMFMGRLG PLTLAYFLAS PKSKRIRYPE TKLTIG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.995
Match:	1xl4A
Description:	Intermediate gating structure 1 of the inwardly rectifying K+ channel KirBac3.1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
potassium channel activity	6.97421456325005	bayes_pls_golite062009
voltage-gated potassium channel activity	6.93926669126255	bayes_pls_golite062009
voltage-gated cation channel activity	6.85197806762042	bayes_pls_golite062009
voltage-gated ion channel activity	6.68953517879833	bayes_pls_golite062009
voltage-gated channel activity	6.66667969342152	bayes_pls_golite062009
metal ion transmembrane transporter activity	5.60647618241473	bayes_pls_golite062009
cation channel activity	5.09551684793166	bayes_pls_golite062009
cation transmembrane transporter activity	4.88789838906314	bayes_pls_golite062009
ion transmembrane transporter activity	4.80939024913503	bayes_pls_golite062009
inward rectifier potassium channel activity	4.64079808042939	bayes_pls_golite062009
ion channel activity	4.50553553033114	bayes_pls_golite062009
gated channel activity	4.47618233399604	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.43208330555032	bayes_pls_golite062009
substrate-specific channel activity	4.39833449623615	bayes_pls_golite062009
passive transmembrane transporter activity	4.38139555510307	bayes_pls_golite062009
channel activity	4.38139555510307	bayes_pls_golite062009
transporter activity	2.77619896060397	bayes_pls_golite062009
transmembrane transporter activity	2.65613366364107	bayes_pls_golite062009
ligand-gated ion channel activity	2.63030973607925	bayes_pls_golite062009
ligand-gated channel activity	2.63030973607925	bayes_pls_golite062009
substrate-specific transporter activity	2.60593795082679	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: