YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375059, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	365 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375059, gi|....

Description	E-value	Query Range	Subject Range
gi\|91774335, gi\|... - gi\|91774335\|ref\|YP_567027.1\| pyruvate carboxylase subunit A [Methanococcoides burtonii DSM 6242], gi...	321.0	[0..6]	[351..1]
gi\|46119399, gi\|... - gi\|67923410\|ref\|ZP_00516889.1\| Acetyl-CoA carboxylase, biotin carboxylase [Crocosphaera watsonii WH ...	314.0	[0..7]	[351..4]
gi\|186685989, gi... - gi\|23129462\|ref\|ZP_00111289.1\| COG0439: Biotin carboxylase [Nostoc punctiforme PCC 73102], gi\|186685...	314.0	[0..7]	[351..3]
gi\|35212579, gi\|... - gi\|37521581\|ref\|NP_924958.1\| acetyl-CoA carboxylase biotin carboxylase subunit [Gloeobacter violaceu...	310.0	[0..7]	[351..4]
gi\|84489713, gi\|... - gi\|84489713\|ref\|YP_447945.1\| pyruvate carboxylase subunit A [Methanosphaera stadtmanae DSM 3091], gi...	310.0	[0..6]	[351..1]
gi\|25293960 - pir\|\|AH1923 biotin carboxylase [imported] - Nostoc sp. (strain PCC 7120) gi\|289133, gi\|10... - gi\|289133\|gb\|AAB51770.1\| biotin carboxylase, pir\|\|A53311 biotin carboxylase (EC 6.3.4.14) - Anabaena... ACCC_NOSS1 - Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accC PE=3 SV=1	309.0	[0..7]	[351..3]
gi\|75906739, gi\|... - gi\|75906739\|ref\|YP_321035.1\| acetyl-CoA carboxylase biotin carboxylase subunit [Anabaena variabilis ...	309.0	[0..7]	[351..3]
gi\|83636689, gi\|... - gi\|83648646\|ref\|YP_437081.1\| acetyl-CoA carboxylase, biotin carboxylase [Hahella chejuensis KCTC 239...	308.0	[0..6]	[351..1]
gi\|22295534, gi\|... - gi\|22299351\|ref\|NP_682598.1\| acetyl-CoA carboxylase biotin carboxylase subunit [Thermosynechococcus ...	308.0	[0..7]	[351..3]
gi\|56685145, gi\|... - gi\|56750186\|ref\|YP_170887.1\| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus elonga... gi\|1399818, gi\|4... - gi\|81300188\|ref\|YP_400396.1\| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus elonga...	308.0	[0..7]	[351..3]

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Predicted Domain #1

Region A:
Residues: [1-365]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQTSTKPKV WVLGNGQLGA MLTHAGEPLA IDVRAVDIMT PTDDILPLAP NDIITAEREQ  60
   61 WPESALSLQL STHPHFVNGP VFSRLADRYS QKSLLDQLNV PTAPWSLVDD HTKVETLYQA 120
  121 FGPRVLMKRR TGGYDGKGQH WLKQAEAGDI PHDWRNLAIA EQAINFDEEV SLVGVRTREG 180
  181 QCVFYPLTLN LHQDGILMAS IAPLARLDHL QAQAETMLSA IMHELEYAGV MAMECFRVGD 240
  241 NLLVNELAPR VHNSGHWTQA GTHMDQFQLH LRALCGIAIP QPQVNFQCVM VNLIGIDNDP 300
  301 RWLSLPNAEL YWYNKEVRPG RKVGHLNLSV PNLTVLTNSI SALQTWMPNQ YQAPLAWILA 360
  361 EFTKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.522879
Match:	1b6rA
Description:	N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain; N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain; N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoribosylaminoimidazole carboxylase activity	8.30252180826751	bayes_pls_golite062009
carboxy-lyase activity	4.46679646341684	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	3.45358843752722	bayes_pls_golite062009
carbamoyl-phosphate synthase activity	2.80055235272563	bayes_pls_golite062009
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	2.72231827182887	bayes_pls_golite062009
catalytic activity	2.5009559386228	bayes_pls_golite062009
ligase activity	2.47642734831155	bayes_pls_golite062009
phosphoribosylamine-glycine ligase activity	1.37477732460326	bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	1.11645327303429	bayes_pls_golite062009
CoA carboxylase activity	0.319428284569229	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	0.140669118443663	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: