YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348331, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	799 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348331, gi|....

Description	E-value	Query Range	Subject Range
gi\|56419437, gi\|... - gi\|56419437\|ref\|YP_146755.1\| heavy metal-transporting ATPase [Geobacillus kaustophilus HTA426], gi\|5...	678.0	[0..20]	[799..4]
gi\|27262376 - gi\|27262376\|gb\|AAN87469.1\| Copper-importing ATPase [Heliobacillus mobilis]	671.0	[0..19]	[798..37]
gi\|242258479, gi... - gi\|242258479\|ref\|ZP_04803277.1\| copper-translocating P-type ATPase [Thermoanaerobacter sp. X513], gi... gi\|241903577, gi... - gi\|241903577\|ref\|ZP_04788299.1\| copper-translocating P-type ATPase [Thermoanaerobacter brockii subsp... gi\|76588523, gi\|... - gi\|76796112\|ref\|ZP_00778480.1\| ATPase, E1-E2 type:Copper ion-binding:Copper-translocating P-type ATP... gi\|114844533, gi... - gi\|167039429\|ref\|YP_001662414.1\| copper-translocating P-type ATPase [Thermoanaerobacter sp. X514], g...	670.0	[0..21]	[798..3]
gi\|42782808, gi\|... - gi\|42782808\|ref\|NP_980055.1\| heavy metal-transporting ATPase [Bacillus cereus ATCC 10987], gi\|427387...	669.0	[0..20]	[799..4]
gi\|20808818 - gi\|20808818\|ref\|NP_623989.1\| Cation transport ATPase [Thermoanaerobacter tengcongensis MB4] gi\|20517469, gi\|... - gi\|20808818\|ref\|NP_623989.1\| cation transport ATPase [Thermoanaerobacter tengcongensis MB4], gi\|2051...	667.0	[0..21]	[799..3]
gi\|88945124, gi\|... - gi\|88945124\|ref\|ZP_01148344.1\| ATPase, E1-E2 type:Copper ion-binding:Copper-translocating P-type ATP...	665.0	[0..20]	[798..13]
gi\|145408869, gi... - gi\|82499630\|ref\|ZP_00885070.1\| ATPase, E1-E2 type:Copper ion-binding:Copper-translocating P-type ATP...	664.0	[0..25]	[798..6]
gi\|52081856, gi\|... - gi\|52081856\|ref\|YP_080647.1\| Cu2+-exporting ATPase [Bacillus licheniformis ATCC 14580], gi\|52005067\|...	663.0	[0..19]	[799..6]
gi\|15613120, gi\|... - gi\|15613120\|ref\|NP_241423.1\| copper-transporting ATPase [Bacillus halodurans C-125], gi\|10173170\|dbj... gi\|25290739 - pir\|\|E83719 copper-transporting ATPase BH0557 [imported] - Bacillus halodurans (strain C-125)	660.0	[0..20]	[799..4]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHPSCFHCN EPVLTGTQFV TQINDRDELM CCPGCQAVSQ AIVDAGLLSY YKFRTEPGNK  60
   61 QTALVPEALN QFSAYDLPEV QQDFVHSEDN SDSVSLSIDG ITCAACAWLI EHKVKQLSGV 120
  121 RQVMVNSTTQ RAMISWDKQQ VKLSDILGQI SRIGYQAAPY QVDEQELTTK QNSRKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1p6tA
Description:	Structure characterization of the water soluble region of P-type ATPase CopA from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
copper chaperone activity	5.99007447506957	bayes_pls_golite062009
metal ion transmembrane transporter activity	5.4007166857771	bayes_pls_golite062009
copper ion transmembrane transporter activity	5.18510514935825	bayes_pls_golite062009
copper-dependent protein binding	5.12489941530131	bayes_pls_golite062009
copper-exporting ATPase activity	5.04749761961029	bayes_pls_golite062009
copper-transporting ATPase activity	5.03252922496602	bayes_pls_golite062009
copper ion binding	5.01875130037421	bayes_pls_golite062009
metallochaperone activity	4.85524337397713	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	4.79570221435856	bayes_pls_golite062009
cation transmembrane transporter activity	4.61622753861072	bayes_pls_golite062009
ion transmembrane transporter activity	4.52484959112186	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.12792340516867	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.10264569844449	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	3.70964017127302	bayes_pls_golite062009
superoxide dismutase copper chaperone activity	3.50705492219116	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.27250923701445	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	2.98847682261773	bayes_pls_golite062009
transition metal ion binding	2.6049784579434	bayes_pls_golite062009
transporter activity	2.43435890488191	bayes_pls_golite062009
transmembrane transporter activity	2.32163502360862	bayes_pls_golite062009
substrate-specific transporter activity	2.28845421748925	bayes_pls_golite062009
metal ion binding	1.84981492985167	bayes_pls_golite062009
cation binding	1.84981492985167	bayes_pls_golite062009
binding	1.84926272403445	bayes_pls_golite062009
primary active transmembrane transporter activity	1.62116507842838	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	1.61680623728503	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.59572740343301	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	1.5925429451548	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	1.59219836319916	bayes_pls_golite062009
active transmembrane transporter activity	1.53883152283038	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.1718859439419	bayes_pls_golite062009
pyrophosphatase activity	1.10705671028492	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.09044745388495	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.0880789970261	bayes_pls_golite062009
ATPase activity	1.08091411328281	bayes_pls_golite062009
ion binding	1.07409701266582	bayes_pls_golite062009
ATPase activity, coupled	1.02520458852568	bayes_pls_golite062009
cation-transporting ATPase activity	0.75722873989123	bayes_pls_golite062009
protein binding	0.736752132095517	bayes_pls_golite062009
hydrolase activity	0.182377209703877	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [177-799]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLRLGLAGFA TMQVMMFALA LYTGYFTDLD VQYRDYFRWV SMIFATPVVL YSAQPFYFSA  60
   61 IRTLLSGKLN MDVSVSIAIG GAFTASCFAT VNGTGEVYFE SVSMFTFFLL LGRYFEQKAR 120
  121 QKASVSSSNL HKLVPLTAHL VNEQGQEEIP AKKLRLGDII LVKPGEMVAA DGCVVEGHSS 180
  181 INEAMLTGEQ MPIDKPVDSQ VFAGTINLEQ PIKVKVTALG QDQLVAEIIR LQELASNTKP 240
  241 AVAMLADKLS RYFSGTILTI ATITYFVWLQ ISPEDAFWVT LSVLVATCPC ALALATPTAV 300
  301 TCATAIFTRL GIITRKAGVF EKLPQIKHVI FDKTGTLTCG TLSVSEVKCH SHLAIEEVLA 360
  361 IAAALETGSL HPIATAFAAY LTPDVVANQV HHEVGFGVKG LINGTEYRIG NAQFTGALVN 420
  421 PEFINQQIWL AWGNDDSLEV LATIEIKDNI RVDSKETVGI LKQQGCRVSI ASGDSSGHVH 480
  481 QLAKALGITD VHSGLTPADK LALVKKLQQS NPVVMFGDGI NDAPVLAGAD LSVAMGSGSA 540
  541 IAKNSADLIL LGDHLSRFTQ AVRVAKLTTQ IIRQNLAWAL GYNALILPLA VTGHVAPYIA 600
  601 AIGMSASSLI VVGNSLRLLR IKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.0
Match:	1mhsA
Description:	Proton ATPase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: