YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373705, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	712 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373705, gi|....

Description	E-value	Query Range	Subject Range
gi\|113970111, gi... - gi\|82496288\|ref\|ZP_00881857.1\| Exodeoxyribonuclease V, alpha subunit [Shewanella sp. MR-4], gi\|82405...	287.0	[0..13]	[698..18]
gi\|78504764, gi\|... - gi\|78687483\|ref\|ZP_00852230.1\| Exodeoxyribonuclease V, alpha subunit [Shewanella sp. ANA-3], gi\|7850...	281.0	[0..1]	[701..1]
gi\|114047349, gi... - gi\|78690554\|ref\|ZP_00855198.1\| Exodeoxyribonuclease V, alpha subunit [Shewanella sp. MR-7], gi\|78510...	276.0	[0..13]	[698..18]
gi\|75188558 - gi\|75188558\|ref\|ZP_00701825.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli E24377...	275.0	[0..112]	[707..25]
gi\|75238266 - gi\|75238266\|ref\|ZP_00722265.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli E11001... gi\|75197699 - gi\|75197699\|ref\|ZP_00707769.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli HS]	275.0	[0..112]	[707..25]
gi\|75812524, gi\|... - gi\|75812524\|ref\|YP_320143.1\| helicase RecD/TraA [Anabaena variabilis ATCC 29413], gi\|75705280\|gb\|ABA...	275.0	[0..5]	[700..173]
gi\|75177773 - gi\|75177773\|ref\|ZP_00697838.1\| COG0210: Superfamily I DNA and RNA helicases [Shigella boydii BS512]	275.0	[0..112]	[707..25]
gi\|75230777 - gi\|75230777\|ref\|ZP_00717240.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli B7A]	275.0	[0..112]	[707..25]
gi\|226838716, gi... - gi\|254039025\|ref\|ZP_04873076.1\| DNA helicase II [Escherichia sp. 1_1_43], gi\|226838716\|gb\|EEH70744.1... gi\|75256260 - gi\|75256260\|ref\|ZP_00727938.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli E22] gi\|75209557 - gi\|75209557\|ref\|ZP_00709778.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli B171] gi\|83569352 - gi\|83569352\|ref\|ZP_00920807.1\| COG0210: Superfamily I DNA and RNA helicases [Shigella dysenteriae 10...	275.0	[0..112]	[707..25]
gi\|91074912, gi\|... - gi\|91213338\|ref\|YP_543324.1\| DNA helicase II [Escherichia coli UTI89], gi\|91074912\|gb\|ABE09793.1\| DN... gi\|226902993, gi... - gi\|237702822\|ref\|ZP_04533303.1\| DNA helicase II [Escherichia sp. 3_2_53FAA], gi\|226902993\|gb\|EEH8925... gi\|26110983, gi\|... - gi\|26250553\|ref\|NP_756593.1\| DNA helicase II [Escherichia coli CFT073], gi\|26110983\|gb\|AAN83167.1\|AE... gi\|83585938 - gi\|83585938\|ref\|ZP_00924577.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli 101-1] gi\|75236878 - gi\|75236878\|ref\|ZP_00720947.1\| COG0210: Superfamily I DNA and RNA helicases [Escherichia coli F11]	275.0	[0..112]	[707..25]

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Predicted Domain #1

Region A:
Residues: [1-712]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNATALAAN WYNAGALRLK APLTELLKYW EKERLITALD RHFALEMARL HPNDAQEPLF  60
   61 MLLCALLSQQ LSAQHTCLVL EYIVPTNPMA EPINRCQIRL SLTELIDALQ HFDAIGAPNS 120
  121 NKPLIFEDGR LYLERYHHFE TQVASALTRL SAAALSLTPS QPLASDNQSL LQLRRQLDCL 180
  181 FPSAAHTVEA NIDWQKVATA TALGNKLAVI TGGPGTGKTT TVTKLLLLQQ LGTPKQIRLV 240
  241 APTGKAAARL SESIKASKAR LEQELQQASK ENPQENQVLL TALSRIPEEA STLHRLLGVI 300
  301 PNSAHFRHHQ GNPLRLDLLI VDEASMVDLP MMYKLLSALP EHAGLILLGD QDQLASVEAG 360
  361 AVLADICAGL KQASTQHTEW KMRYSQAQAE QLTALTGFNL SHFIHSEPKI GDSLCMLTHS 420
  421 HRFKGDAGIG LLASAVNRAD LAGILSVWQS GLAELTWLEH SVDHSQTQAK ISEPSNNTGL 480
  481 KALLAQACEQ YGDYLRLLQP THATPIHTSE PFCPPSAMEA IAKFNQYRIL CAMRTGDYGV 540
  541 EGINLAVTKA LAQAKLIQPQ QEFYLGRPII IQSNDYNLGL FNGDIGLILQ DEERADRLMA 600
  601 HFIKADGKLL KVLPARLPSH ETCYAMTVHK SQGSEFNRVA LVLPPAPSLV QWQLLTKELI 660
  661 YTAITRAKQH FSCLGTQQVF ERASLQATQR ASGLADRLWG DQSLSHTAAV NS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.09691
Match:	1w36D
Description:	RecBCD:DNA complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
exodeoxyribonuclease V activity	6.45399906372635	bayes_pls_golite062009
deoxyribonuclease activity	4.214585502776	bayes_pls_golite062009
exodeoxyribonuclease activity, producing 5'-phosphomonoesters	4.1611108835958	bayes_pls_golite062009
exodeoxyribonuclease activity	4.15362118941033	bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	3.51963098050513	bayes_pls_golite062009
exonuclease activity	3.26822223300964	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.16381244011837	bayes_pls_golite062009
pyrophosphatase activity	2.13284212711072	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.11265775498161	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.11046854230259	bayes_pls_golite062009
hydrolase activity	1.66122526893602	bayes_pls_golite062009
ATPase activity	1.53315090215319	bayes_pls_golite062009
binding	1.41264401383678	bayes_pls_golite062009
DNA-dependent ATPase activity	1.1653223755451	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
helicase activity	0.895387263223335	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.847189464648844	bayes_pls_golite062009
DNA helicase activity	0.8104901979223	bayes_pls_golite062009
four-way junction helicase activity	0.26252931460003	bayes_pls_golite062009
nucleic acid binding	0.216266069700019	bayes_pls_golite062009
ATP-dependent helicase activity	0.156322124775303	bayes_pls_golite062009
purine NTP-dependent helicase activity	0.156322124775303	bayes_pls_golite062009
nucleotide binding	0.114848452385726	bayes_pls_golite062009
purine nucleotide binding	0.10713474095071	bayes_pls_golite062009
purine ribonucleotide binding	0.0916519414118148	bayes_pls_golite062009
ribonucleotide binding	0.0915913646217636	bayes_pls_golite062009
ATP-dependent DNA helicase activity	0.0398638249772338	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: