YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347439, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	648 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347439, gi|....

Description	E-value	Query Range	Subject Range
gi\|69949523, gi\|... - gi\|69949523\|ref\|ZP_00637520.1\| Potassium efflux system protein [Shewanella frigidimarina NCIMB 400],...	334.0	[0..1]	[648..1]
gi\|114048182, gi... - gi\|114048182\|ref\|YP_738732.1\| potassium efflux system protein [Shewanella sp. MR-7], gi\|113889624\|gb... gi\|82496380, gi\|... - gi\|82496380\|ref\|ZP_00881948.1\| Potassium efflux system protein [Shewanella sp. MR-4], gi\|82405529\|gb...	333.0	[0..1]	[648..1]
gi\|117613570, gi... - gi\|78687744\|ref\|ZP_00852483.1\| Potassium efflux system protein [Shewanella sp. ANA-3], gi\|78504522\|g...	329.0	[0..1]	[648..1]
gi\|113947484, gi... - gi\|160874616\|ref\|YP_001553932.1\| potassium efflux system protein [Shewanella baltica OS195], gi\|1608...	328.0	[0..1]	[648..1]
gi\|126173706, gi... - gi\|68543869\|ref\|ZP_00583556.1\| Potassium efflux system protein [Shewanella baltica OS155], gi\|685184...	327.0	[0..1]	[648..1]
gi\|69159248, gi\|... - gi\|91793965\|ref\|YP_563616.1\| potassium efflux system protein [Shewanella denitrificans OS217], gi\|91...	326.0	[0..1]	[648..1]
gi\|17229538, gi\|... - gi\|17229538\|ref\|NP_486086.1\| hypothetical protein alr2046 [Nostoc sp. PCC 7120], gi\|17131137\|dbj\|BAB... gi\|25534468 - pir\|\|AH2061 hypothetical protein alr2046 [imported] - Nostoc sp. (strain PCC 7120)	325.0	[0..2]	[647..4]
gi\|78360186, gi\|... - gi\|78367740\|ref\|ZP_00838003.1\| Potassium efflux system protein [Shewanella sp. PV-4], gi\|78360186\|gb...	325.0	[0..1]	[648..1]
gi\|75909294, gi\|... - gi\|75909294\|ref\|YP_323590.1\| Sodium/hydrogen exchanger [Anabaena variabilis ATCC 29413], gi\|75703019...	324.0	[0..2]	[647..4]
gi\|21227031, gi\|... - gi\|21227031\|ref\|NP_632953.1\| glutathione-regulated potassium-efflux system protein [Methanosarcina m...	324.0	[0..1]	[646..1]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHGFLIQIL LMLVIAIIAI ALLRRIGLPA ILAYLLTGVL SGPSGFHWFT QQQMQSVAEL  60
   61 GVVLLMFTLG LEFSVPRLWA MRRTVFGLGS AQVFVTTVLT MLVALACGLN WRESLVIGAA 120
  121 IALSSTAIVL KLLNELGWLR RRHGELSVSV LLFQDLAVVP LLILLPLLG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [170-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSDEPLVLAS IAWALLKGIL AFFFLMALGK WALPRLFDEV ARSRSNELFV LSTLVVALVT  60
   61 GAFTQWLGLS MALGAFMAGM LLGESQYRRQ LEADIRPFRD LLMGLF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [276-648]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FISIGMMLNF ALVIQFWWQI LLILLAVVFG KALIIHGLLR LVGEPFRIAI STALSLAQVG  60
   61 EFSFVVLALA VSYGLLSNET STMLVMVAVL SMSIAPWLVR HCMDIAKWLL GIRQSGHVDD 120
  121 VVPVITDDHD LVVILGYGRV GQTIARFLKT EAVPYLVLDL DPTRVYEARR AGEPIYFGDV 180
  181 CKRAILKQIG IKHAKMIVIT FCESRSVEEA LPLCRQLAPE ANILVRTRDD SELDLLQKAG 240
  241 ANQVIPETLE GSLMLVSQVL HQCGVPLARI LKRLESERRN HYQFLHGFFS GTETDFTLES 300
  301 LHAVLLHRGA DAVGKQVADI DWELLRVELR AIRRSGQEIE HPASDWVFRA GDILLIVGKP 360
  361 RRLEKAEAKL LQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.221849
Match:	1lnqA
Description:	Potassium channel-related protein MthK
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
potassium channel activity	7.45561375804942	bayes_pls_golite062009
voltage-gated potassium channel activity	7.44058571110681	bayes_pls_golite062009
voltage-gated cation channel activity	7.3386698127529	bayes_pls_golite062009
voltage-gated ion channel activity	7.16469552587678	bayes_pls_golite062009
voltage-gated channel activity	7.14063840809955	bayes_pls_golite062009
metal ion transmembrane transporter activity	5.93188092092616	bayes_pls_golite062009
cation channel activity	5.49362429102263	bayes_pls_golite062009
cation transmembrane transporter activity	5.13805155650973	bayes_pls_golite062009
inward rectifier potassium channel activity	5.0997110076666	bayes_pls_golite062009
ion transmembrane transporter activity	5.04374327766634	bayes_pls_golite062009
ion channel activity	4.88752793243149	bayes_pls_golite062009
gated channel activity	4.87650815860853	bayes_pls_golite062009
substrate-specific channel activity	4.76774891791883	bayes_pls_golite062009
channel activity	4.7460548761362	bayes_pls_golite062009
passive transmembrane transporter activity	4.7460548761362	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.64120459994573	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	3.88411419181428	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	2.96809690970616	bayes_pls_golite062009
ligand-gated ion channel activity	2.94075163359893	bayes_pls_golite062009
ligand-gated channel activity	2.94075163359893	bayes_pls_golite062009
transporter activity	2.93091397928047	bayes_pls_golite062009
transmembrane transporter activity	2.82224868778929	bayes_pls_golite062009
substrate-specific transporter activity	2.79688978937497	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.13014428099026	bayes_pls_golite062009
potassium ion transmembrane transporter activity	1.34449386905866	bayes_pls_golite062009
active transmembrane transporter activity	0.239024094835991	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: