YRC Public Data Repository - Protein Structure Prediction

Protein:	SELA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	473 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SELA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|78685432, gi\|... - gi\|78685432\|ref\|ZP_00850210.1\| L-seryl-tRNA selenium transferase [Shewanella sp. ANA-3], gi\|78506810...	247.0	[0..1]	[473..4]
gi\|82495833, gi\|... - gi\|82495833\|ref\|ZP_00881406.1\| L-seryl-tRNA selenium transferase [Shewanella sp. MR-4], gi\|82406138\|...	246.0	[0..1]	[473..4]
gi\|78511495, gi\|... - gi\|78689095\|ref\|ZP_00853760.1\| L-seryl-tRNA selenium transferase [Shewanella sp. MR-7], gi\|78511495\|...	245.0	[0..1]	[473..1]
gi\|167039810, gi... - gi\|167039810\|ref\|YP_001662795.1\| cysteine desulfurase [Thermoanaerobacter sp. X514], gi\|166854050\|gb...	230.0	[0..96]	[473..3]
gi\|151363275, gi... - gi\|152998657\|ref\|YP_001364338.1\| selenocysteine synthase [Shewanella baltica OS185], gi\|151363275\|gb... gi\|113909676, gi... - gi\|160873235\|ref\|YP_001552551.1\| selenocysteine synthase [Shewanella baltica OS195], gi\|160858757\|gb...	228.0	[0..1]	[466..4]
gi\|20808820, gi\|... - gi\|20808820\|ref\|NP_623991.1\| cysteine sulfinate desulfinase/cysteine desulfurase [Thermoanaerobacter... gi\|20808820 - gi\|20808820\|ref\|NP_623991.1\| Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme ...	228.0	[0..96]	[473..3]
gi\|241903579, gi... - gi\|241903579\|ref\|ZP_04788301.1\| cysteine desulfurase NifS [Thermoanaerobacter brockii subsp. finnii ... gi\|167039427, gi... - gi\|167039427\|ref\|YP_001662412.1\| cysteine desulfurase [Thermoanaerobacter sp. X514], gi\|166853667\|gb... gi\|76588521, gi\|... - gi\|76796110\|ref\|ZP_00778478.1\| Aminotransferase, class V [Thermoanaerobacter ethanolicus ATCC 33223]...	227.0	[0..95]	[473..2]
gi\|18977625, gi\|... - gi\|18977625\|ref\|NP_578982.1\| aspartate aminotransferase [Pyrococcus furiosus DSM 3638], gi\|18893347\|...	226.0	[0..74]	[472..2]
gi\|90590715, gi\|... - gi\|90590715\|ref\|ZP_01246361.1\| Cystathionine gamma-synthase [Flavobacterium johnsoniae UW101], gi\|90...	225.0	[0..88]	[471..5]

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Predicted Domain #1

Region A:
Residues: [1-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTQVPDTPQ ALYRALPSMD SLLADAVLAP LLQRYGKAAV KAALDSQLRT ARELIAQERR  60
   61 LPAWCANPSL LNGYLVDQLS KDYSHSLKPV WNLTGTILHT NLGRAQQSEA AIRAVTSVMR 120
  121 YPTPLEFELA AGERGHRDNA ISGLIQRLTG AEACCVVNNN AAAVLLMLSA VAAGKEVIVS 180
  181 RGELVEIGGA FRIPDIMRQA GCTLVEVGST NRTHLKDYEQ AITENTAAIM KVHTSNYHIS 240
  241 GFTAAVEEAR LGQLCRERGI LLISDLGSGS LTDLRRFGLK QEPTPQAMLA DGVDLVSFSG 300
  301 DKLLGGPQSG LIVGKQALIN KLQSHPLKRA LRCDKLILAA LEATLIHYLN PETLDKELPI 360
  361 MAKFARSQAE LRQIGERLQQ ALAPLFTPSY GLELVECQTQ VGSGSQPDTF LPSIGLCFNA 420
  421 QEGGSLTLLE QHFKQAQRPV IGRMTQDQLR LDLRGIDDEA ELLAELSTLG VQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	1djuA
Description:	Aromatic aminoacid aminotransferase, AroAT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity	2.32006532103078	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	1.59895155864374	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	1.59895155864374	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity	0.994935084630764	bayes_pls_golite062009
transferase activity	0.737426388870721	bayes_pls_golite062009
carbon-sulfur lyase activity	0.698312655247044	bayes_pls_golite062009
cystathionine beta-lyase activity	0.6849039330512	bayes_pls_golite062009
transcription regulator activity	0.636782746250952	bayes_pls_golite062009
nucleic acid binding	0.526698053525422	bayes_pls_golite062009
DNA binding	0.516618701017633	bayes_pls_golite062009
cystathionine gamma-lyase activity	0.505859361763689	bayes_pls_golite062009
binding	0.450641761940864	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	0.271623203801431	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	0.212525865555941	bayes_pls_golite062009
transcription factor activity	0.188693175079415	bayes_pls_golite062009
structural molecule activity	0.0788116272021627	bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity	0.0669652799570574	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: