| Protein: | PRP40_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 583 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP40_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
4.0E-91 | [1..583] | [1..583] |
|
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6.0E-63 | [2..549] | [303..908] |
|
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1.0E-61 | [3..553] | [6..585] |
|
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1.0E-58 | [2..566] | [491..1016] |
|
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3.0E-58 | [2..550] | [189..778] |
|
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2.0E-56 | [2..551] | [34..600] |
|
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9.0E-56 | [2..560] | [82..640] |
|
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1.0E-55 | [4..551] | [98..681] |
|
Region A: Residues: [1-33] |
1 11 21 31 41 51
| | | | | |
1 MSIWKEAKDA SGRIYYYNTL TKKSTWEKPK ELI
|
| Detection Method: |  |
| Confidence: | 27.31133 |
| Match: | 1e0lA_ |
| Description: | Formin binding protein FBP28 domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.16402927467227 | bayes_pls_golite062009 |
| binding | 2.02935060794966 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.56045209816163 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.54071619149498 | bayes_pls_golite062009 |
| transcription activator activity | 1.50941346594353 | bayes_pls_golite062009 |
| transcription factor binding | 1.46474521462806 | bayes_pls_golite062009 |
| protein binding | 0.772594643545448 | bayes_pls_golite062009 |
| catalytic activity | 0.210712504691113 | bayes_pls_golite062009 |
|
Region A: Residues: [34-82] |
1 11 21 31 41 51
| | | | | |
1 SQEELLLREN GWKAAKTADG KVYYYNPTTR ETSWTIPAFE KKVEPIAEQ
|
| Detection Method: | |
| Confidence: | 8.30103 |
| Match: | 1i5hW_ |
| Description: | Ubiquitin ligase NEDD4 WWIII domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [83-153] |
1 11 21 31 41 51
| | | | | |
1 KHDTVSHAQV NGNRIALTAG EKQEPGRTIN EEESQYANNS KLLNVRRRTK EEAEKEFITM 60
61 LKENQVDSTW S
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.370 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.409 | a.2.7 | tRNA-binding arm |
| View | Download | 0.477 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.394 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.359 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.321 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.316 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.293 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.271 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.236 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.233 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.212 | a.64.1 | Saposin |
| View | Download | 0.205 | a.7.7 | BAG domain |
|
Region A: Residues: [154-494] |
1 11 21 31 41 51
| | | | | |
1 FSRIISELGT RDPRYWMVDD DPLWKKEMFE KYLSNRSADQ LLKEHNETSK FKEAFQKMLQ 60
61 NNSHIKYYTR WPTAKRLIAD EPIYKHSVVN EKTKRQTFQD YIDTLIDTQK ESKKKLKTQA 120
121 LKELREYLNG IITTSSSETF ITWQQLLNHY VFDKSKRYMA NRHFKVLTHE DVLNEYLKIV 180
181 NTIENDLQNK LNELRLRNYT RDRIARDNFK SLLREVPIKI KANTRWSDIY PHIKSDPRFL 240
241 HMLGRNGSSC LDLFLDFVDE QRMYIFAQRS IAQQTLIDQN FEWNDADSDE ITKQNIEKVL 300
301 ENDRKFDKVD KEDISLIVDG LIKQRNEKIQ QKLQNERRIL E
|
| Detection Method: | |
| Confidence: | 23.69897 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [495-583] |
1 11 21 31 41 51
| | | | | |
1 QKKHYFWLLL QRTYTKTGKP KPSTWDLASK ELGESLEYKA LGDEDNIRRQ IFEDFKPESS 60
61 APTAESATAN LTLTASKKRH LTPAVELDY
|
| Detection Method: | |
| Confidence: | 11.537602 |
| Match: | PF01846 |
| Description: | FF domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
