Protein: | IF4F1_YEAST |
Organism: | Saccharomyces cerevisiae S288c |
Length: | 952 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IF4F1_YEAST.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..952] | [1..952] |
|
0.0 | [9..911] | [119..1015] |
|
4.0E-95 | [451..939] | [64..544] |
|
2.0E-93 | [451..939] | [65..545] |
|
3.0E-92 | [430..939] | [37..516] |
|
2.0E-91 | [52..911] | [6..858] |
Region A: Residues: [1-82] |
1 11 21 31 41 51 | | | | | | 1 MTDETAHPTQ SASKQESAAL KQTGDDQQES QQQRGYTNYN NGSNYTQKKP YNSNRPHQQR 60 61 GGKFGPNRYN NRGNYNGGGS FR |
Detection Method: | |
Confidence: | 12.14 |
Match: | 1l8mA |
Description: | No description for 1l8mA was found. |
Region A: Residues: [83-402] |
1 11 21 31 41 51 | | | | | | 1 GGHMGANSSN VPWTGYYNNY PVYYQPQQMA AAGSAPANPI PVEEKSPVPT KIEITTKSGE 60 61 HLDLKEQHKA KLQSQERSTV SPQPESKLKE TSDSTSTSTP TPTPSTNDSK ASSEENISEA 120 121 EKTRRNFIEQ VKLRKAALEK KRKEQLEGSS GNNNIPMKTT PENVEEKGSD KPEVTEKTKP 180 181 AEEKSAEPEV KQETPAEEGE QGEKGQIKEE STPKVLTFAE RLKLKKQQKE REEKTEGKEN 240 241 KEVPVQEETK SAIESAPVPP SEQVKEETEV AETEQSNIDE SATTPAIPTK SDEAEAEVEA 300 301 EAGDAGTKIG LEAEIETTTD |
Detection Method: | |
Confidence: | 10.91 |
Match: | 1jv2B |
Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [403-505] |
1 11 21 31 41 51 | | | | | | 1 ETDDGTNTVS HILNVLKDAT PIEDVFSFNY PEGIEGPDIK YKKEHVKYTY GPTFLLQFKD 60 61 KLNVKADAEW VQSTASKIVI PPGMGRGNRS RDSGRFGNNS SRG |
Detection Method: | |
Confidence: | 10.91 |
Match: | 1jv2B |
Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
translation initiation factor activity | 10.603094323259 | bayes_pls_golite062009 |
translation factor activity, nucleic acid binding | 6.05435928492991 | bayes_pls_golite062009 |
translation regulator activity | 6.02151774494908 | bayes_pls_golite062009 |
binding | 1.66056773797288 | bayes_pls_golite062009 |
nucleic acid binding | 1.33292024661028 | bayes_pls_golite062009 |
Region A: Residues: [506-591] |
1 11 21 31 41 51 | | | | | | 1 HDFRNTSVRN MDDRANSRTS SKRRSKRMND DRRSNRSYTS RRDRERGSYR NEEKREDDKP 60 61 KEEVAPLVPS ANRWVPKFKS KKTEKK |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [592-731] |
1 11 21 31 41 51 | | | | | | 1 LAPDGKTELL DKDEVERKMK SLLNKLTLEM FDAISSEILA IANISVWETN GETLKAVIEQ 60 61 IFLKACDEPH WSSMYAQLCG KVVKELNPDI TDETNEGKTG PKLVLHYLVA RCHAEFDKGW 120 121 TDKLPTNEDG TPLEPEMMSE |
Detection Method: | |
Confidence: | 310.165202 |
Match: | 1hu3A_ |
Description: | Eukaryotic initiation factor eIF4G |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
translation initiation factor activity | 9.72578576774139 | bayes_pls_golite062009 |
RNA cap binding | 6.12623630895688 | bayes_pls_golite062009 |
translation factor activity, nucleic acid binding | 5.51508149717622 | bayes_pls_golite062009 |
translation regulator activity | 5.47755138510933 | bayes_pls_golite062009 |
structural molecule activity | 4.37969512292045 | bayes_pls_golite062009 |
binding | 2.48958374349477 | bayes_pls_golite062009 |
RNA binding | 1.98024495780436 | bayes_pls_golite062009 |
protein binding | 1.94427330399472 | bayes_pls_golite062009 |
nucleic acid binding | 1.14394632253646 | bayes_pls_golite062009 |
signal sequence binding | 0.289133192719901 | bayes_pls_golite062009 |
cytoskeletal protein binding | 0.232758919136574 | bayes_pls_golite062009 |
transcription regulator activity | 0.223441052840823 | bayes_pls_golite062009 |
DNA binding | 0.206335065849379 | bayes_pls_golite062009 |
mRNA binding | 0.12130984199507 | bayes_pls_golite062009 |
Region A: Residues: [732-890] |
1 11 21 31 41 51 | | | | | | 1 EYYAAASAKR RGLGLVRFIG FLYRLNLLTG KMMFECFRRL MKDLTDSPSE ETLESVVELL 60 61 NTVGEQFETD SFRTGQATLE GSQLLDSLFG ILDNIIQTAK ISSRIKFKLI DIKELRHDKN 120 121 WNSDKKDNGP KTIQQIHEEE ERQRQLKNNS RSNSRRTNN |
Detection Method: | |
Confidence: | 310.165202 |
Match: | 1hu3A_ |
Description: | Eukaryotic initiation factor eIF4G |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [891-952] |
1 11 21 31 41 51 | | | | | | 1 SSNRHSFRRD APPASKDSFI TTRTYSQRNS QRAPPPKEEP AAPTSTATNM FSALMGESDD 60 61 EE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.