Protein: | ECM5_YEAST |
Organism: | Saccharomyces cerevisiae S288c |
Length: | 1411 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ECM5_YEAST.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1411] | [1..1411] |
|
0.0 | [94..1367] | [144..1427] |
|
0.0 | [105..1393] | [148..1448] |
|
0.0 | [95..1371] | [207..1560] |
|
0.0 | [246..1367] | [42..1096] |
|
0.0 | [96..1191] | [11..1065] |
|
0.0 | [282..1386] | [383..1473] |
|
0.0 | [130..1385] | [68..1235] |
Region A: Residues: [1-114] |
1 11 21 31 41 51 | | | | | | 1 MSGHDSVTKI SHILNEPVNE KVMVQNGFHE SSKIADIELE IQERPSIKQW ESPRSAVIPT 60 61 SNHNFSPFLY TQFKSRGAAP FAPETIKSVD LVELPEGVPA RVFHEKTGLF YQIS |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [115-211] |
1 11 21 31 41 51 | | | | | | 1 PHSIPTFILA KKELPDPIKF YELVEDLGSV YGCVKLKIIP DADKFTQLNV DVDRLWFKAR 60 61 KQFFNSNEFQ RTKIVDFYAK LYNFHNKIKK STLTRIP |
Detection Method: | |
Confidence: | 91.0103 |
Match: | 1kqqA_ |
Description: | DNA-binding domain from the dead ringer protein |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [212-317] |
1 11 21 31 41 51 | | | | | | 1 SIDKRTLDLY RLRSCVKLRG GFNAVCEKKL WAQIGRELGY SGRIMSSLST SLRSAYAKIL 60 61 LDFDIYEEEE QAARNNEKNE DMVESEIFRH SNSRSRDEEE PLHKKA |
Detection Method: | |
Confidence: | 91.0103 |
Match: | 1kqqA_ |
Description: | DNA-binding domain from the dead ringer protein |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 2.82429745664596 | bayes_pls_golite062009 |
nucleic acid binding | 1.96196521368194 | bayes_pls_golite062009 |
DNA binding | 1.95175882800914 | bayes_pls_golite062009 |
transcription regulator activity | 1.69129851237145 | bayes_pls_golite062009 |
transcription coactivator activity | 0.9777334079728 | bayes_pls_golite062009 |
protein binding | 0.923807406971133 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 0.89101605547219 | bayes_pls_golite062009 |
transcription activator activity | 0.302416902310042 | bayes_pls_golite062009 |
transcription factor activity | 0.143417837230029 | bayes_pls_golite062009 |
transcription factor binding | 0.0217863068537998 | bayes_pls_golite062009 |
Region A: Residues: [318-394] |
1 11 21 31 41 51 | | | | | | 1 KIHRDVFRAG SINHEFKRMR DIKHIKGFPT YFNSLTEFKL GYTQSTETTL PGYDFTFWEN 60 61 GMEIYDKSKY ETKTSPV |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [395-739] |
1 11 21 31 41 51 | | | | | | 1 YNLRQYYEKS LAVFTAIVAK FGSSYPDLFA KHTTLPQKEF ERLYFHLLSE HFIDFEIDTG 60 61 LGLPCSMRSP GNNSSNEKFA IKNILDQWNL DNIPLNELSL LQHLDLDMAN FTRTTYDIGM 120 121 LFSCQGWSVS DHFLPSIDFN HLGSTKLVYS IAPKDMEKFE ALIARGKSEW DTIQSRPRYS 180 181 TSDDELKSFI ETDFYKSFLD AEQSADYSNT GDNSKNSFPE DKIAGNTLHD GSQSDFIFEP 240 241 NFILANGIKL YKTTQEQGSY IFKFPKAFTC SIGSGFYLSQ NAKFAPSSWL RFSSEAAKWT 300 301 SKMGFLPGLD VNQLLINALL NSNNPVLRKK CRDLISNYVV EEAEN |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [740-824] |
1 11 21 31 41 51 | | | | | | 1 SKKLGELIGT VDVVYNKLNY ISDISLESTG LSKIVVTHGA LQRNLSLKEF VVLLEKPENG 60 61 AHSICGIPIR DQSGNLNVCL HSYFD |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [825-886] |
1 11 21 31 41 51 | | | | | | 1 SASLGIALDG LDKPPTSYLL VHNEDFEKKW DVLMTSTFRN RTVPLNIIQY LISHTDSNTE 60 61 FN |
Detection Method: | |
Confidence: | 4.09691 |
Match: | 1dg3A_ |
Description: | Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [887-1219] |
1 11 21 31 41 51 | | | | | | 1 RMLRSNFDDS LLLIEKCKKF IKTFVDVSCS VKDVDFGNGF NLRHLPLKFS DNMADNLESL 60 61 YESVRKCSIE FSEKPTIIRL YHVSRQFPID NRDIIDGNNL DLLKELYQKS LTIPLKVSYW 120 121 TKLTRKICRL EWLSVYEHIF IERCDIKNED PAKYSLPLLY SYFEFGLKYC DSEDIDKLGE 180 181 VRKLILKYQD MMQKVRVFLK KDPPSKISLS DLEDVLLDIE EYRLPIQSSF FSELDYVIRE 240 241 IENAKKMNDV NILYNTDNID KIDELIRKND PKFVKFANQF NGSRLDKRPL ASDNSGSVKA 300 301 KQELKVFKLW NQHLDQIMQK NKFIEILPSI FRC |
Detection Method: | |
Confidence: | 23.30103 |
Match: | 1i84S_ |
Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [1220-1299] |
1 11 21 31 41 51 | | | | | | 1 LDLKSDKYIP LESCSKRQTK YCFCRRVEEG TAMVECEICK EWYHVDCISN GELVPPDDPN 60 61 VLFVCSICTP PCMAVDNIEG |
Detection Method: | |
Confidence: | 2.30103 |
Match: | 1fp0A_ |
Description: | Nuclear corepressor KAP-1 (TIF-1beta) |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [1300-1411] |
1 11 21 31 41 51 | | | | | | 1 VTFELDDLKR ILVESLKLSL IPDPPILKNL FDVFAFALNF KNEMEKELFT NGYVNQLSST 60 61 HKIKYYLRKL KGSQCGFTNL TDPLRKHCQV KDAEAIKWLT DNGRIIITGI PN |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.373 | 0.952 | cellular cell wall organization | c.30.1 | PreATP-grasp domain |