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View Structure Prediction Details

Protein: CWC16_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 278 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CWC16_YEAST.

Description E-value Query
Range
Subject
Range
gi|190409737 - gi|190409737|gb|EDV13002.1| 32.3 kDa protein in CWP1-MBR1 intergenic region [Saccharomyces cerevisia...
YJU2 - Essential protein required for pre-mRNA splicing; associates transiently with the spliceosomal NTC (...
gi|207343551 - gi|207343551|gb|EDZ70985.1| YKL095Wp-like protein [Saccharomyces cerevisiae AWRI1631]
CWC16_YEAST - Protein CWC16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJU2 PE=1 SV=1
1.0E-97 [1..278] [1..278]
CC130_MOUSE - Coiled-coil domain-containing protein 130 OS=Mus musculus GN=Ccdc130 PE=2 SV=1
5.0E-74 [1..213] [1..213]
CCDC130 - coiled-coil domain containing 130
1.0E-73 [1..214] [1..214]
CE01697 - YJU2 protein status:Partially_confirmed UniProt:Q09651 protein_id:CAA87435.1
1.0E-63 [1..208] [1..207]
gi|15222627, gi|... - gi|62320731|dbj|BAD95398.1| hypothetical protein [Arabidopsis thaliana], gi|44681478|gb|AAS47679.1| ...
1.0E-61 [1..208] [4..209]

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Predicted Domain #1
Region A:
Residues: [1-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERKAINKY YPPDYNPLEA EKLSRKMAKK LKTMNKSHAS IRLMTPFSMR CLECNEYIPK  60
   61 SRKFNGKKEL LKEKYLDSIK IYRLTISCPR CANSIAFRTD PGNSDYVMEV GGVRNYVPQK 120
  121 PNDDLNAKTA VESIDETLQR LVREKEMEQN EKMGIKEQAD DKMDLLEKRL AKIQQEQEDD 180
  181 EELENLRKKN LEMSQRAEMI NRSKHAQQEK AV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term Confidence Notes
transcription regulator activity 2.74510263950241 bayes_pls_golite062009
DNA binding 2.44566855074341 bayes_pls_golite062009
binding 2.27558039325716 bayes_pls_golite062009
nucleic acid binding 2.24669580094588 bayes_pls_golite062009
transcription factor activity 1.9022303099625 bayes_pls_golite062009
sequence-specific DNA binding 0.911347670379084 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.839985608194026 bayes_pls_golite062009
transcription activator activity 0.685318320359585 bayes_pls_golite062009
protein binding 0.606784236996154 bayes_pls_golite062009
transcription factor binding 0.50605454225389 bayes_pls_golite062009
ligand-dependent nuclear receptor activity 0.296219659608347 bayes_pls_golite062009
catalytic activity 0.133319360419662 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [213-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTDDLDNLVD QVFDNHRQRT NKPGNNNDEK RTPLFNPTST KGKIQKKSSV RTNPLGIVIK  60
   61 RGKSLK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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