YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17547284
Organism:	Ralstonia solanacearum GMI1000
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17547284.

Description	E-value	Query Range	Subject Range
gi\|83648093, gi\|... - gi\|83648093\|ref\|YP_436528.1\| histone acetyltransferase HPA2-like acetyltransferase [Hahella chejuens...	132.0	[0..8]	[165..1]
gi\|20807038 - gi\|20807038\|ref\|NP_622209.1\| Acetyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20807038, gi\|... - gi\|20807038\|ref\|NP_622209.1\| acetyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515525\|g...	130.0	[0..8]	[166..1]
gi\|77460351, gi\|... - gi\|77460351\|ref\|YP_349858.1\| GCN5-related N-acetyltransferase [Pseudomonas fluorescens Pf0-1], gi\|77...	130.0	[0..7]	[167..10]
gi\|88795965, gi\|... - gi\|88795965\|ref\|ZP_01111652.1\| putative N-acetyltransferase [Alteromonas macleodii 'Deep ecotype'], ...	129.0	[0..8]	[166..2]
gi\|70729199, gi\|... - gi\|70729199\|ref\|YP_258935.1\| acetyltransferase [Pseudomonas fluorescens Pf-5], gi\|68343498\|gb\|AAY911...	129.0	[0..9]	[167..1]
gi\|66572142, gi\|... - gi\|66766810\|ref\|YP_241572.1\| N-acetyltransferase [Xanthomonas campestris pv. campestris str. 8004], ... gi\|21111444, gi\|... - gi\|21229934\|ref\|NP_635851.1\| N-acetyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33...	129.0	[0..10]	[168..5]
gi\|83724380, gi\|... - gi\|83748957\|ref\|ZP_00945966.1\| Diamine acetyltransferase [Ralstonia solanacearum UW551], gi\|83724380... gi\|207744184, gi... - gi\|207744184\|ref\|YP_002260576.1\| acetyltransferase protein [Ralstonia solanacearum IPO1609], gi\|2065...	127.0	[0..1]	[177..1]
gi\|62424656 - gi\|62424656\|ref\|ZP_00379799.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase...	127.0	[0..11]	[166..1]
gi\|14521872, gi\|... - gi\|5459092\|emb\|CAB50578.1\| N-terminal acetyltransferase [Pyrococcus abyssi GE5], gi\|14521872\|ref\|NP_... gi\|5459092, gi\|7... - pir\|\|D75017 n-terminal acetyltransferase PAB1098 - Pyrococcus abyssi (strain Orsay), gi\|5459092\|emb...	127.0	[0..11]	[168..20]
gi\|21106562, gi\|... - gi\|21241247\|ref\|NP_640829.1\| N-acetyltransferase [Xanthomonas axonopodis pv. citri str. 306], gi\|211...	126.0	[0..1]	[167..1]

Back

Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTQADRAT FTLRSAAPDD CEALVRLIGA LAEYEKLTHL MQATPEALRA VLFGPRPYGE  60
   61 AVVAEVDGRA VGFALFFHNV STFLCKPGLY LEDLFVEPAW RGHGIGKALL VHVARLARER 120
  121 DCGRFEWSVL DWNAPSIAFY EAMGADVLPD WRICRTTGDA LARMAALPMP EGLTAPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	2fe7A
Description:	The crystal structure of a probable N-acetyltransferase from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
diamine N-acetyltransferase activity	2.43372305799009	bayes_pls_golite062009
transferase activity	2.42798083712145	bayes_pls_golite062009
N-acyltransferase activity	2.34015546109271	bayes_pls_golite062009
spermidine binding	1.99599610494414	bayes_pls_golite062009
catalytic activity	1.97933499002461	bayes_pls_golite062009
N-acetyltransferase activity	1.48038364316264	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.42711272311757	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.24328242407788	bayes_pls_golite062009
acyltransferase activity	1.2338745976101	bayes_pls_golite062009
binding	1.22537494136129	bayes_pls_golite062009
acetyltransferase activity	0.823367673029436	bayes_pls_golite062009
histone acetyltransferase activity	0.78221517928533	bayes_pls_golite062009
lysine N-acetyltransferase activity	0.78221517928533	bayes_pls_golite062009
ornithine decarboxylase regulator activity	0.498400437550611	bayes_pls_golite062009
transcription regulator activity	0.466327780973785	bayes_pls_golite062009
ornithine decarboxylase inhibitor activity	0.450278366782129	bayes_pls_golite062009
nucleic acid binding	0.398459895679745	bayes_pls_golite062009
transcription factor binding	0.18247998052007	bayes_pls_golite062009
protein binding	0.075825416385311	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: