| Protein: | gi|24079969 |
| Organism: | Homo sapiens |
| Length: | 406 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24079969.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..390] | [5..394] |
|
|
0.0 | [1..390] | [5..394] |
|
|
0.0 | [1..390] | [21..410] |
|
|
0.0 | [1..390] | [5..394] |
|
|
0.0 | [1..390] | [5..395] |
|
|
0.0 | [1..390] | [5..393] |
|
|
0.0 | [1..389] | [5..395] |
|
Region A: Residues: [1-105] |
1 11 21 31 41 51
| | | | | |
1 AGLIEANGEL KVFIDQNLSP GKGVVSLVAV HPSTVNPLGK QLLPKTFGQS NVNIAQQVVI 60
61 GTPQRPAASN TLVVGSPHTP STHFASQNQP SDSSPWSAGK RNRKG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [106-190] |
1 11 21 31 41 51
| | | | | |
1 EKNGKGLRHF SMKVCEKVQR KGTTSYNEVA DELVAEFSAA DNHILPNESA YDQKNIRRRV 60
61 YDALNVLMAM NIISKEKKEI KWIGL
|
| Detection Method: | |
| Confidence: | 31.69897 |
| Match: | 1cf7B |
| Description: | Cell cycle transcription factor DP-2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 5.08959163553491 | bayes_pls_golite062009 |
| nucleic acid binding | 4.99681957904233 | bayes_pls_golite062009 |
| transcription factor activity | 4.33152142980289 | bayes_pls_golite062009 |
| transcription activator activity | 3.70589483230587 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.58179858678904 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| transcription repressor activity | 2.22485867684613 | bayes_pls_golite062009 |
| protein binding | 1.80415286835431 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.2723726467408 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.23177057841536 | bayes_pls_golite062009 |
|
Region A: Residues: [191-406] |
1 11 21 31 41 51
| | | | | |
1 PTNSAQECQN LEVERQRRLE RIKQKQSQLQ ELILQQIAFK NLVQRNRHAE QQASRPPPPN 60
61 SVIHLPFIIV NTSKKTVIDC SISNDKFEYL FNFDNTFEIH DDIEVLKRMG MACGLESGSC 120
121 SAEDLKMARS LVPKALEPYV TEMAQGTVGG VFITTAGSTS NGTRFSASDL TNGADGMLAT 180
181 SSNGSQYSGS RVETPVSYVG EDDEEDDDFN ENDEDD
|
| Detection Method: | |
| Confidence: | 70.154902 |
| Match: | 2azeA |
| Description: | Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer |
Matching Structure (courtesy of the PDB): |
|
